Better scripting support

@mueller-physics mueller-physics released this Mar 21, 2018 · 17 commits to develop since this release

Simplified scripts and added examples, please take a look at

org/fairsim/fiji/StepByStep.java (for Java)
scripts/ImageJ-reconstruction.bsh (for Beanshell)

This release also includes focal plane 5 from the test datasets for easy testing of the scripts. Just open the TIFF in ImageJ and run the beanshell script.

The script needs at least v.1.4.0 (this release) to work, as some additions where made to simplify it.

Image correction and parameter fit warnings

@mueller-physics mueller-physics released this Feb 16, 2018 · 25 commits to develop since this release

Added two features to deal with less-than-ideal data:

Image correction tab: Allows for rudimentary corrections of intensity variations between angles and phases.

Parameter estimation warning: A window will open with parameter estimation results (modulation depth estimations) and some guides how to interpret these.

New JTransforms connector

@mueller-physics mueller-physics released this Jul 31, 2017 · 0 commits to master since this release

fairSIM will now connect to standard JTransforms (3.1), additionally to shipping its own fork.
The maven build will only build against JTransforms, the makefile can use both.

Mavenized fairSIM build

@mueller-physics mueller-physics released this Jul 11, 2017 · 0 commits to master since this release

No new features, but fairSIM can now be build with the maven build system.

RL-deconvolution support

@mueller-physics mueller-physics released this Jun 1, 2017 · 38 commits to develop since this release

This version adds (preliminary) support for Richardson-Lucy-based filtering.
See their publication for more detail.
To enable the feature, use the "settings" menu for the reconstruction.

Time-lapse with parameter estimation

@mueller-physics mueller-physics released this Mar 13, 2017 · 0 commits to master since this release

Time-lapse mode can now be switched to rerun the parameter estimation on every time point.

Time-lapse beta version

@mueller-physics mueller-physics released this Feb 16, 2017

This version supports reconstruction time-lapse (multiple time points) SIM stacks. This is a beta release from the current development branch.

fairSIM 1.0.2

@mueller-physics mueller-physics released this Jun 16, 2016

  • Small bugfix in test script
  • GUI allows to select a single angle for reconstruction (beware: the resolution will not be isotropic, thus the apodization filter will not be ideal)

fairSIM 1.0.1

@mueller-physics mueller-physics released this Feb 14, 2016 · 5 commits to master since this release

Changes to v1.0:

  • Full version information and URL in about window

fairSIM v1.0, first release of fairSIM

@mueller-physics mueller-physics released this Feb 2, 2016 · 8 commits to master since this release

Initial release of the source code.

Code version from 2015-10-16, latest version available to the reviewers of the fairSIM publication.