Simplified scripts and added examples, please take a look at
org/fairsim/fiji/StepByStep.java (for Java)
scripts/ImageJ-reconstruction.bsh (for Beanshell)
This release also includes focal plane 5 from the test datasets for easy testing of the scripts. Just open the TIFF in ImageJ and run the beanshell script.
The script needs at least v.1.4.0 (this release) to work, as some additions where made to simplify it.