• software for UCE (and general) phylogenomics

    Python 28 28 Updated Jul 27, 2018
  • Tally Approximations of Phylogenetic Informativeness Rapidly (TAPIR)

    Python 4 Updated Jul 2, 2018
  • A strongly opinionated, iterative, guided contig assembly pipeline. Integrates (+error-correction), bwa-mem, bedtools, and samtools. MPI and multiprocessing aware.

    Python BSD-3-Clause Updated Jun 8, 2018
  • pre-process illumina reads

    Python 14 7 Updated Jun 6, 2018
  • Software for processing data from RADcap

    Python 1 Updated May 29, 2018
  • Our laboratory repository

    Python 2 2 BSD-2-Clause Updated May 22, 2018
  • Docker files that we use

    BSD-3-Clause Updated Apr 25, 2018
  • 3RAD data processing

    MIT Updated Jan 10, 2018
  • Shell 1 1 Updated Dec 8, 2017
  • Variety of Code for Counting Illumina Index Sequences

    Python MIT Updated Aug 3, 2017
  • edit distance sequence tags and helpers

    Python 6 2 Updated Dec 6, 2016
  • Virtual digests of DNA

    Python Updated Jul 20, 2016
  • bioinformatics program recipes for the conda package manager

    Python 3 4 Updated Jun 16, 2015
  • Python 2 Updated May 22, 2015
  • demultiplex massively parallel sequencing data

    Python 6 Updated Nov 25, 2014
  • Shell Updated Oct 7, 2014
  • Python Updated Jul 23, 2014
  • Python Updated Jun 28, 2014
  • parallel, automated SH-testing

    Python Updated Jun 23, 2014
  • An Alfred workflow to interact with a user's Zotero data.

    AppleScript 12 Updated Jun 7, 2014
  • Code for designing UCE probes

    Python Updated May 6, 2014
  • Python Updated Mar 3, 2014
  • the application and database underlying birds.faircloth-lab.org

    Python 6 2 Updated Mar 2, 2014
  • a cookiecutter template for a protocols package

    Updated Feb 24, 2014
  • illumina library prep protocol

    Python Updated Feb 24, 2014
  • Tools for sequence and alignment manipulation

    Python 8 2 Updated Feb 22, 2014
  • Bayesian haplotype-based polymorphism discovery and genotyping.

    C++ 151 MIT Updated Dec 18, 2013
  • An alternative python mechanism to access the Illumina BaseSpace API

    Python Updated Oct 31, 2013
  • Python Updated May 1, 2013
  • Locate, error-correct, trim, and organize (hierarchically) sequence-tagged next-generation DNA reads

    Python 4 Updated Mar 31, 2013