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#!/usr/bin/env python
# encoding: utf-8
import os
from setuptools import setup
from itero import __version__
def package_files(directory):
"""package up files. from stackoverflow.com
how-to-add-package-data-recursively-in-python-setup-py"""
paths = []
for (path, directories, filenames) in os.walk(directory):
for filename in filenames:
paths.append(os.path.join('..', path, filename))
return paths
setup(
name='itero',
version=__version__,
description='a strongly opinionated, iterative, guided assembly pipeline',
url='https://github.com/faircloth-lab/itero',
author='Brant C. Faircloth',
author_email='borg@faircloth-lab.org',
license='MIT',
platforms='any',
packages=[
'itero', 'itero.assemble', 'itero.check', 'itero.cli'
],
data_files=[('config', ['itero/config/itero.conf'])],
scripts=['bin/itero'],
package_data={'': package_files('itero/tests')},
install_requires=['numpy', 'schwimmbad', 'biopython', 'six', 'mpi4py'],
classifiers=[
"Development Status :: 4 - Beta",
"Environment :: Console",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: MIT License",
"Natural Language :: English",
"Operating System :: POSIX",
"Programming Language :: Python :: 2.7",
"Topic :: Scientific/Engineering :: Bio-Informatics",
],
)
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