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Adding unaligned.fasta files from new taxa to existing dataset

Status: Open.

#377 In faircloth-lab/phyluce;

· hutumpyancha opened on Sep 2, 2025

Processing demultiplexed UCE fastq files from NCBI SRA

Status: Open.

#376 In faircloth-lab/phyluce;

· SaunakP25 opened on Aug 28, 2025

Error in Workflows Mapping

Status: Open.

#375 In faircloth-lab/phyluce;

· thu-115 opened on Aug 18, 2025

phyluce_align_get_only_loci_with_min_taxa not giving the correct number of taxa in output

Status: Open.

#373 In faircloth-lab/phyluce;

· GabrielaFJacintho opened on Jun 4, 2025

Too much information for Phyluce / SPAdes?

Status: Open.

#372 In faircloth-lab/phyluce;

· jb23590 opened on May 22, 2025

AttributeError: 'str' object has no attribute 'decode'. Did you mean: 'encode'?

Status: Open.

#371 In faircloth-lab/phyluce;

· mooreld opened on Apr 1, 2025

phyluce_assembly_get_fastas_from_match_counts

Status: Open.

#370 In faircloth-lab/phyluce;

· mlovelynn opened on Mar 27, 2025

How to handle long branches (fresh and degraded samples) and low UCE capture

Status: Open.

#367 In faircloth-lab/phyluce;

· jbernst opened on Feb 19, 2025

Issue with RAM

Status: Open.

#366 In faircloth-lab/phyluce;

· jb23590 opened on Feb 6, 2025

assembly_assemblo_spades: how to including several singletons fastq files?

Status: Open.

#363 In faircloth-lab/phyluce;

· Angelica-Pulido opened on Jan 17, 2025

Error running phyluce_ncbi_prep_uce_align_files_for_ncbi_targeted_locus_db

Status: Open.

#362 In faircloth-lab/phyluce;

· tomgiarla opened on Jan 9, 2025

phyluce_assembly_assemblo_spades failing for some sequences

Status: Open.

#361 In faircloth-lab/phyluce;

· antnette opened on Jan 9, 2025