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Short read de novo assembler using de Bruijn graphs
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contrib
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doc/manual_src
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third-party/zlib-1.2.3
CREDITS.txt
ChangeLog
For_MAC_or_SPARC_users.txt
LICENSE.txt
Makefile
README.txt
shuffleSequences_fasta.pl
shuffleSequences_fastq.pl
update_velvet.sh

README.txt

README.TXT

VELVET SOURCE 
March 28 2008
Daniel Zerbino

NOTE: The PDF manual in this directory contains all the information contained
in this text file, plus much more!

> SUMMARY
	* A/ REQUIREMENTS
	* B/ COMPILING INSTRUCTIONS
	* C/ WHERE IS THE MANUAL?

----------------------------------------------------------------------------------
A/ REQUIREMENTS

	Velvet should function on any standard 64bit Linux environment with
gcc. A good amount of physical memory (12GB to start with, more is no luxury)
is recommended. 

----------------------------------------------------------------------------------
B/ COMPILING INSTRUCTIONS

Normally, with a GNU environment, just type:

> make

For colorspace Velvet replace that command with 

> make color

Otherwise compile each *.c file separately, then execute the default
instructions at the top of Makefile. 

----------------------------------------------------------------------------------
C/ WHERE IS THE MANUAL?

If you cannot find the PDF manual in the source directory (probably because
you downloaded Velvet through git), you can simply compile it:

> make doc
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