GitHub is home to over 40 million developers working together. Join them to grow your own development teams, manage permissions, and collaborate on projects.
The genTB project, the Django site, variant calling and prediciton pipeline, and mapping pipeline with hooks to two ravens
Download biosample and SRA runinfo metadata from NCBI
Variable extraction for partners health system .txt file format database to dataframe for analysis in python or R.
Code used for analysis of Peru cluster
Wide and Deep Neural Net for predicting TB resistance from genotypic data
A wrapper pipe for variant calling and genome assembly for M.tuberculosis
Pipeline that takes user country-lineage-drug queries and output SNP alignment/BEAST tree output
fast, memory-efficient, pythonic (and command-line) access to fasta sequence files