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Apr 10, 2014 @fauziharoon Updated README.md
1 ## annotateM
Apr 9, 2014 @fauziharoon Create README.md
2 =========
3
4 Have you been having problems annotating your genome?
5 Confused on which annotation program to use?
6 Why are the annotations different using different programs?
7 The ORFs are called differently and why are there more ORFs called in this program than the other?
8 Would you like to have a unified automated annotation pipeline that searches against the currently existing databases
9 like IMG, Uniref, COG, Pfam, TIGRfam?
10
Apr 9, 2014 @fauziharoon Update README.md
11 If yes is your answer to any of these questions?
Apr 9, 2014 @fauziharoon Create README.md
12
13 Try annotateM.
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Apr 10, 2014 @fauziharoon Updated README.md
15 **Dependencies:**
16 1. prokka
17 2. blast
18 3. hmmer
19 4. Pfam_scan
20 5. contig_extractor
21 6. parallel
22
23 **Database files:**
24 1. IMG
25 2. Uniref90
26 3. COG
27 4. Pfam
28 5. TIGRfam
Apr 9, 2014 @fauziharoon Create README.md
29
30 In the near future, we will be adding more databases for searching, including RAST and KEGG.
31 Would you like to make the program better? Feel free to do so and don't forget to git push afterwards.
32
33 Queries here on github or at fauziharoon[at_symbol]gmail.com
34