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| <h1>annotateM</h1> | |
| <p>annotate my genome</p> | |
| <p class="view"><a href="https://github.com/fauziharoon/annotateM">View the Project on GitHub <small>fauziharoon/annotateM</small></a></p> | |
| <ul> | |
| <li><a href="https://github.com/fauziharoon/annotateM/zipball/master">Download <strong>ZIP File</strong></a></li> | |
| <li><a href="https://github.com/fauziharoon/annotateM/tarball/master">Download <strong>TAR Ball</strong></a></li> | |
| <li><a href="https://github.com/fauziharoon/annotateM">View On <strong>GitHub</strong></a></li> | |
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| <section> | |
| <h2> | |
| <a name="annotatem" class="anchor" href="#annotatem"><span class="octicon octicon-link"></span></a>annotateM</h2> | |
| <h1></h1> | |
| <p>Have you been having problems annotating your genome? | |
| Confused on which annotation program to use? | |
| Why are the annotations different using different programs? | |
| The ORFs are called differently and why are there more ORFs called in this program than the other? | |
| Would you like to have a unified automated annotation pipeline that searches against the currently existing databases | |
| like IMG, Uniref, COG, Pfam, TIGRfam?</p> | |
| <p>If yes is your answer to any of these questions? </p> | |
| <p>Try annotateM.</p> | |
| <p><strong>Dependencies:</strong> | |
| 1. prokka | |
| 2. blast | |
| 3. hmmer | |
| 4. Pfam_scan | |
| 5. contig_extractor | |
| 6. parallel</p> | |
| <p><strong>Database files:</strong> | |
| 1. IMG | |
| 2. Uniref | |
| 3. COG | |
| 4. Pfam | |
| 5. TIGRfam</p> | |
| <p>In the near future, we will be adding more databases for searching, including RAST and KEGG. | |
| Would you like to make the program better? Feel free to do so and don't forget to git push afterwards.</p> | |
| <p>Queries here on github or at <code>fauziharoon[at_symbol]gmail.com</code></p> | |
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