params.json

{"name":"annotateM","tagline":"annotate my genome","body":"##  annotateM\r\n=========\r\n\r\nHave you been having problems annotating your genome? \r\nConfused on which annotation program to use? \r\nWhy are the annotations different using different programs?\r\nThe ORFs are called differently and why are there more ORFs called in this program than the other?\r\nWould you like to have a unified automated annotation pipeline that searches against the currently existing databases\r\nlike IMG, Uniref, COG, Pfam, TIGRfam?\r\n\r\nIf yes is your answer to any of these questions? \r\n\r\nTry annotateM.\r\n\r\n**Dependencies:**\r\n1. prokka\r\n2. blast\r\n3. hmmer\r\n4. Pfam_scan\r\n5. contig_extractor\r\n6. parallel\r\n\r\n**Database files:**\r\n1. IMG\r\n2. Uniref\r\n3. COG\r\n4. Pfam\r\n5. TIGRfam\r\n\r\nIn the near future, we will be adding more databases for searching, including RAST and KEGG.\r\nWould you like to make the program better? Feel free to do so and don't forget to git push afterwards.\r\n\r\nQueries here on github or at `fauziharoon[at_symbol]gmail.com`\r\n\r\n","google":"","note":"Don't delete this file! It's used internally to help with page regeneration."}