diff --git a/annotateM b/annotateM index 516a733..87a2cd2 100755 --- a/annotateM +++ b/annotateM @@ -9,10 +9,11 @@ # # Suggested workflow: # 1) run your genome nucleotide fasta file through annotateM -# 2) generate a tab-delimited file -# 3) open the file in ms excel or oo calc -# 4) manually curate the annotations based on evalues/scores/desc etc -# 5) metabolic reconstruction of organism +# 2) then run post_annotateM to include the contig id,orf_start and end +# 3) generate a tab-delimited file +# 4) open the file in ms excel or oo calc +# 5) manually curate the annotations based on evalues/scores/desc etc +# 6) metabolic reconstruction of organism # # Copyright (C) Mohamed Fauzi Haroon # Special appearance from Adam Skarshewski diff --git a/post_annotateM b/post_annotateM index 458d838..efbd571 100755 --- a/post_annotateM +++ b/post_annotateM @@ -9,10 +9,11 @@ # # Suggested workflow: # 1) run your genome nucleotide fasta file through annotateM -# 2) generate a tab-delimited file -# 3) open the file in ms excel or oo calc -# 4) manually curate the annotations based on evalues/scores/desc etc -# 5) metabolic reconstruction of organism +# 2) then run post_annotateM to include the contig id,orf_start and end +# 3) generate a tab-delimited file +# 4) open the file in ms excel or oo calc +# 5) manually curate the annotations based on evalues/scores/desc etc +# 6) metabolic reconstruction of organism # # Copyright (C) Mohamed Fauzi Haroon # Special appearance from Adam Skarshewski @@ -359,7 +360,7 @@ __DATA__ =head1 NAME - annotateM + post_annotateM =head1 COPYRIGHT @@ -385,7 +386,7 @@ __DATA__ =head1 SYNOPSIS - annotateM -i [finaloutputfromannotatem] -l [locustag] -g [gff] + post_annotateM -i [finaloutputfromannotatem] -l [locustag] -g [gff] -i final_output.txt final_output.txt file generated from annotateM -l locustag Name of locus tag