Merge branch 'master' of github.com:fauziharoon/annotateM

README.md

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+##  annotateM
+=========
+
+Have you been having problems annotating your genome? 
+Confused on which annotation program to use? 
+Why are the annotations different using different programs?
+The ORFs are called differently and why are there more ORFs called in this program than the other?
+Would you like to have a unified automated annotation pipeline that searches against the currently existing databases
+like IMG, Uniref, COG, Pfam, TIGRfam?
+
+If yes is your answer to any of these questions? 
+
+Try annotateM.
+
+**Dependencies:**
+1. prokka
+2. blast
+3. hmmer
+4. Pfam_scan
+5. contig_extractor
+6. parallel
+
+**Database files:**
+1. IMG
+2. Uniref90
+3. COG
+4. Pfam
+5. TIGRfam
+
+In the near future, we will be adding more databases for searching, including RAST and KEGG.
+Would you like to make the program better? Feel free to do so and don't forget to git push afterwards.
+
+Queries here on github or at fauziharoon[at_symbol]gmail.com
+