From 57c2c471b3ffbfc33e628fb947cfd2887df88e93 Mon Sep 17 00:00:00 2001
From: fauziharoon <faaozhi@gmail.com>
Date: Thu, 10 Apr 2014 09:53:12 +1000
Subject: [PATCH 1/3] Create README.md

---
 README.md | 34 ++++++++++++++++++++++++++++++++++
 1 file changed, 34 insertions(+)
 create mode 100644 README.md

diff --git a/README.md b/README.md
new file mode 100644
index 0000000..f3353fe
--- /dev/null
+++ b/README.md
@@ -0,0 +1,34 @@
+annotateM
+=========
+
+Have you been having problems annotating your genome? 
+Confused on which annotation program to use? 
+Why are the annotations different using different programs?
+The ORFs are called differently and why are there more ORFs called in this program than the other?
+Would you like to have a unified automated annotation pipeline that searches against the currently existing databases
+like IMG, Uniref, COG, Pfam, TIGRfam?
+
+If yes is your answer to anyt of these questions? 
+
+Try annotateM.
+
+Dependencies:
+1) prokka
+2) blast
+3) hmmer
+4) Pfam_scan
+5) contig_extractor
+6) parallel
+
+Database files:
+1) IMG
+2) Uniref90
+3) COG
+4) Pfam
+5) TIGRfam
+
+In the near future, we will be adding more databases for searching, including RAST and KEGG.
+Would you like to make the program better? Feel free to do so and don't forget to git push afterwards.
+
+Queries here on github or at fauziharoon[at_symbol]gmail.com
+

From ed9a855aa93f589174eec15c777bd65386526ae0 Mon Sep 17 00:00:00 2001
From: fauziharoon <faaozhi@gmail.com>
Date: Thu, 10 Apr 2014 09:54:40 +1000
Subject: [PATCH 2/3] Update README.md

---
 README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/README.md b/README.md
index f3353fe..979b6ca 100644
--- a/README.md
+++ b/README.md
@@ -8,7 +8,7 @@ The ORFs are called differently and why are there more ORFs called in this progr
 Would you like to have a unified automated annotation pipeline that searches against the currently existing databases
 like IMG, Uniref, COG, Pfam, TIGRfam?
 
-If yes is your answer to anyt of these questions? 
+If yes is your answer to any of these questions? 
 
 Try annotateM.
 

From dcf4f8da9207b6cb200d49f989a62450a6999ac5 Mon Sep 17 00:00:00 2001
From: fauziharoon <faaozhi@gmail.com>
Date: Thu, 10 Apr 2014 10:50:45 +1000
Subject: [PATCH 3/3] Updated README.md

---
 README.md | 30 +++++++++++++++---------------
 1 file changed, 15 insertions(+), 15 deletions(-)

diff --git a/README.md b/README.md
index 979b6ca..8eb52f8 100644
--- a/README.md
+++ b/README.md
@@ -1,4 +1,4 @@
-annotateM
+##  annotateM
 =========
 
 Have you been having problems annotating your genome? 
@@ -12,20 +12,20 @@ If yes is your answer to any of these questions?
 
 Try annotateM.
 
-Dependencies:
-1) prokka
-2) blast
-3) hmmer
-4) Pfam_scan
-5) contig_extractor
-6) parallel
-
-Database files:
-1) IMG
-2) Uniref90
-3) COG
-4) Pfam
-5) TIGRfam
+**Dependencies:**
+1. prokka
+2. blast
+3. hmmer
+4. Pfam_scan
+5. contig_extractor
+6. parallel
+
+**Database files:**
+1. IMG
+2. Uniref90
+3. COG
+4. Pfam
+5. TIGRfam
 
 In the near future, we will be adding more databases for searching, including RAST and KEGG.
 Would you like to make the program better? Feel free to do so and don't forget to git push afterwards.