From 6c9a8edb38ae5ac69ba1a4a8d919ab61b261cd3f Mon Sep 17 00:00:00 2001 From: fauziharoon Date: Thu, 10 Apr 2014 13:38:49 +1000 Subject: [PATCH 1/3] Create gh-pages branch via GitHub --- images/checker.png | Bin 0 -> 250 bytes index.html | 74 +++++++++ javascripts/scale.fix.js | 20 +++ params.json | 1 + stylesheets/pygment_trac.css | 60 ++++++++ stylesheets/styles.css | 356 +++++++++++++++++++++++++++++++++++++++++++ 6 files changed, 511 insertions(+) create mode 100644 images/checker.png create mode 100644 index.html create mode 100644 javascripts/scale.fix.js create mode 100644 params.json create mode 100644 stylesheets/pygment_trac.css create mode 100644 stylesheets/styles.css diff --git a/images/checker.png b/images/checker.png new file mode 100644 index 0000000000000000000000000000000000000000..ab1454032c6ec47a4c974f4e4d75bd226911b4fc GIT binary patch literal 250 zcmeAS@N?(olHy`uVBq!ia0vp^3P3E!!3HFKxnwkf6icy_X9x!n)NrJ90QsB+9+AZi z4BSE>%y{W;-5;Q!Oo?kmNpOBzNqJ&XDuZK6ep0G}TV_#ed45rLv4V53Y2nt#W z{&tJwQo64!`zEoY0VG=WX{H35gh8JhW7>iX;yrE$GemF_3=9!wFW${k`+fjuK7*&L KpUXO@geCwfrcS5; literal 0 HcmV?d00001 diff --git a/index.html b/index.html new file mode 100644 index 0000000..03c94d5 --- /dev/null +++ b/index.html @@ -0,0 +1,74 @@ + + + + + + annotateM by fauziharoon + + + + + + + + + +
+
+

annotateM

+

annotate my genome

+

View the Project on GitHub fauziharoon/annotateM

+ +
+
+

+annotateM

+ +

+ +

Have you been having problems annotating your genome? +Confused on which annotation program to use? +Why are the annotations different using different programs? +The ORFs are called differently and why are there more ORFs called in this program than the other? +Would you like to have a unified automated annotation pipeline that searches against the currently existing databases +like IMG, Uniref, COG, Pfam, TIGRfam?

+ +

If yes is your answer to any of these questions?

+ +

Try annotateM.

+ +

Dependencies: +1. prokka +2. blast +3. hmmer +4. Pfam_scan +5. contig_extractor +6. parallel

+ +

Database files: +1. IMG +2. Uniref90 +3. COG +4. Pfam +5. TIGRfam

+ +

In the near future, we will be adding more databases for searching, including RAST and KEGG. +Would you like to make the program better? Feel free to do so and don't forget to git push afterwards.

+ +

Queries here on github or at fauziharoon[at_symbol]gmail.com

+
+
+ + + + + \ No newline at end of file diff --git a/javascripts/scale.fix.js b/javascripts/scale.fix.js new file mode 100644 index 0000000..08716c0 --- /dev/null +++ b/javascripts/scale.fix.js @@ -0,0 +1,20 @@ +fixScale = function(doc) { + + var addEvent = 'addEventListener', + type = 'gesturestart', + qsa = 'querySelectorAll', + scales = [1, 1], + meta = qsa in doc ? doc[qsa]('meta[name=viewport]') : []; + + function fix() { + meta.content = 'width=device-width,minimum-scale=' + scales[0] + ',maximum-scale=' + scales[1]; + doc.removeEventListener(type, fix, true); + } + + if ((meta = meta[meta.length - 1]) && addEvent in doc) { + fix(); + scales = [.25, 1.6]; + doc[addEvent](type, fix, true); + } + +}; \ No newline at end of file diff --git a/params.json b/params.json new file mode 100644 index 0000000..26f5e51 --- /dev/null +++ b/params.json @@ -0,0 +1 @@ +{"name":"annotateM","tagline":"annotate my genome","body":"## annotateM\r\n=========\r\n\r\nHave you been having problems annotating your genome? \r\nConfused on which annotation program to use? \r\nWhy are the annotations different using different programs?\r\nThe ORFs are called differently and why are there more ORFs called in this program than the other?\r\nWould you like to have a unified automated annotation pipeline that searches against the currently existing databases\r\nlike IMG, Uniref, COG, Pfam, TIGRfam?\r\n\r\nIf yes is your answer to any of these questions? \r\n\r\nTry annotateM.\r\n\r\n**Dependencies:**\r\n1. prokka\r\n2. blast\r\n3. hmmer\r\n4. 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+ box-shadow: none; + width: 100%; + } + + footer { + -webkit-border-radius: 0; + -moz-border-radius: 0; + -ms-border-radius: 0; + -o-border-radius: 0; + border-radius: 0; + padding: 20px; + width: auto; + } + footer p { + float: none; + margin: 0; + } + footer p + p { + float: none; + } +} +@media print, screen and (max-width:580px) { + header ul { + display: none; + } + + header p.view { + display: block; + } + + header p { + width: 100%; + } +} +@media print { + header p.view a small:before { + content: 'at http://github.com/'; + } +} From 1a63209f1b506a33183d82d325dd568512687c31 Mon Sep 17 00:00:00 2001 From: fauziharoon Date: Thu, 10 Apr 2014 14:37:41 +1000 Subject: [PATCH 2/3] Create gh-pages branch via GitHub --- index.html | 4 ++-- params.json | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/index.html b/index.html index 03c94d5..87bd8c6 100644 --- a/index.html +++ b/index.html @@ -53,7 +53,7 @@

Database files: 1. IMG -2. Uniref90 +2. Uniref 3. COG 4. Pfam 5. TIGRfam

@@ -61,7 +61,7 @@

In the near future, we will be adding more databases for searching, including RAST and KEGG. Would you like to make the program better? Feel free to do so and don't forget to git push afterwards.

-

Queries here on github or at fauziharoon[at_symbol]gmail.com

+

Queries here on github or at fauziharoon[at_symbol]gmail.com