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Apr 2, 2016 @rynge Added conf file and initial support for hisat2
1 pegasus.metrics.app = OSG-GEM
Mar 21, 2016 @wpoehlm added files
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3 pegasus.dir.useTimestamp = true
4 pegasus.dir.storage.deep = false
5 pegasus.dir.storage.mapper = Flat
6 pegasus.condor.logs.symlink = false
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May 18, 2016 @rynge Trimmomatic output in separate files, improved handling of annotation…
8 pegasus.gridstart.arguments = -f
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Mar 21, 2016 @wpoehlm added files
10 pegasus.data.configuration = nonsharedfs
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Mar 25, 2016 @rynge Changes discussed at OSG all hands meeting. New faster splitter.
12 pegasus.transfer.bypass.input.staging = true
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Apr 27, 2016 @rynge Moved to new version in OASIS, added ref prefix functionallity
14 pegasus.transfer.threads = 3
Mar 25, 2016 @rynge Changes discussed at OSG all hands meeting. New faster splitter.
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Apr 20, 2016 @rynge Fixed merge bug
16 dagman.retry = 2
Mar 25, 2016 @rynge Changes discussed at OSG all hands meeting. New faster splitter.
17 dagman.maxpre = 1
Aug 8, 2016 @rynge Added support for multiple inputs and a GEM merge at the end. Simplie…
18 dagman.maxidle = 1000
Mar 21, 2016 @wpoehlm added files
19
Oct 3, 2016 @rynge Moved SRA download jobs to vanilla universe
20 # limit the number of SRA download jobs we can run at the same time
21 dagman.sradownload.maxjobs = 50
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