feltus/OSG-GEM

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Update SSH key setup

Added support for STAR read alignment software

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Added support for single end reads.  In the config file, the user must specify whether input datasets contain single or paired-end reads.  A mixture of single and paired end reads cannot be used.

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just a slight change to add a new line

Improved documentation regarding ssh key setup

OSG-GEM Update …

Support added for:

-Processing multiple input datasets in a single workflow
-Downloading input data directly from NCBI SRA database

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Update Documentation

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Added some OSG details

Format links

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Trimmomatic output in separate files, improved handling of annotation… …

… file and config checks

Moved to new version in OASIS, added ref prefix functionallity

Initial commit