/OSG-GEM

History for OSG-GEM/submit
Commits on Mar 13, 2017
  1. @wpoehlm

    use new Pegasus OASIS module

    wpoehlm committed Mar 13, 2017
    a102b28
Commits on Feb 2, 2017
  1. @wpoehlm

    Added Log Merge Script to workflow. In addition to all standard outpu… 

    …t files, a report of trimming and alignment statistics, QC_Report.tab, will be present in outputs directory
    wpoehlm committed Feb 2, 2017
    869eb35
Commits on Dec 16, 2016

  1. Improved file system layout when running on Jetstream

    mats@rynge.net committed Dec 16, 2016
    0d942b4
Commits on Dec 13, 2016
  1. @rynge

    Enabled the workflow to be executed on Jetstream

    rynge committed Dec 13, 2016
    b428b9d
Commits on Oct 11, 2016
  1. @rynge

    Improved output dir message

    rynge committed Oct 11, 2016
    1543fb1
  2. @rynge

    Make sure sites.xml is generated once and only once with the correct … 

    …values
    rynge committed Oct 11, 2016
    ef70e8a
Commits on Sep 30, 2016
  1. @rynge

    Switched back to stashcp for data staging

    rynge committed Sep 30, 2016
    9296d24
Commits on Sep 29, 2016
  1. @rynge

    Moved workflow to use /local-scratch filesystem

    rynge committed Sep 29, 2016
    6347e2f
Commits on Aug 9, 2016
  1. @wpoehlm

    Update submit 

    Added LD library path for Pegasus 4.7.0dev
    wpoehlm committed on GitHub Aug 9, 2016
    4bf6c48
Commits on Aug 8, 2016
  1. @rynge

    Added support for multiple inputs and a GEM merge at the end. Simplie… 

    …d workflow by removing 3rd dax level (requires Pegasus 4.7)
    rynge committed Aug 8, 2016
    a2194cf
Commits on May 28, 2016
  1. @wpoehlm

    Increased default memory request

    wpoehlm committed May 28, 2016
    f06788d
Commits on May 18, 2016
  1. @rynge

    Trimmomatic output in separate files, improved handling of annotation… 

    … file and config checks
    rynge committed May 18, 2016
    3e1f836
Commits on Apr 27, 2016
  1. @rynge

    Moved to new version in OASIS, added ref prefix functionallity

    rynge committed Apr 27, 2016
    0a68c30
Commits on Apr 22, 2016
  1. @wpoehlm

    fixed hisat2 merging support

    wpoehlm committed Apr 22, 2016
    2f98f34
Commits on Apr 2, 2016
  1. @rynge

    Added conf file and initial support for hisat2

    rynge committed Apr 2, 2016
    6288fc1
Commits on Mar 25, 2016
  1. @rynge

    Changes discussed at OSG all hands meeting. New faster splitter.

    rynge committed Mar 25, 2016
    e0da539
Commits on Mar 21, 2016
  1. @wpoehlm

    added files

    wpoehlm committed Mar 21, 2016
    b377e53