Results in feltus/OSG-GEM

#10

hisat2 command missing un-paired reads

I noticed that in the tools/hisat2 file that when hisat2 is executed it does not include the -U command that includes the unpaired reads that were placed in a separate file after trimmomatic. Just curious ...

  • Opened by spficklin Oct 25, 2016
  • 4 comments
#9

Workflow Failing

We have several workflows that are failing. Here is a list of some of the errors from different jobs that are occurring: =============================sra-download_ID0000007============================= ...

  • Opened by spficklin Oct 23, 2016
  • 5 comments
#8

Workflow Failing when using Login01 to submit

The test workflow is failing when I submit it from the login01 node. error file: /local-scratch/wpoehlm/workflows/osg-gem-1476974120/workflow/osg-gem-1476974120/00/00/dax-level-2_ID0000003.err.002 -------------------Task ...

  • Opened by wpoehlm Oct 20, 2016
  • 1 comment
#7

Update README.md

just a slight change to add a new line

#6

Create SSH key as part of submit?

So in my rush to get the pipeline running I completely skipped over the step for creating the SSH key (thanks Will for the correction). This isn't an urgent thing but would it be possible to have ...

#5

Issue a stable release?

Can you issue a stable release version of OSG-GEM?

  • Opened by spficklin Sep 28, 2016
  • 2 comments
#4

monitord Failing

I'm getting the following error message in the monitord log files when running OSG-GEM. The workflow doesn't seem to work for me :-/ ... so, I'm digging into it. This may not be related bu ...

  • Opened by spficklin Sep 28, 2016
  • 2 comments
#3

Pegasus 4.7 in local home directory of rynge

I'm trying to run OSG-GEM and it seems that Pegasus version 4.7 is housed in a home directory: /home/rynge/software/pegasus-4.7.0dev/bin Shouldn't this be a global module that can be loaded? ...

  • Opened by spficklin Sep 28, 2016
  • 4 comments
#2

Format links

Format list of tool links.

  • Opened by nawatts May 27, 2016
  • 1 comment
#1