Results in feltus/OSG-GEM
hisat2 command missing un-paired reads
I noticed that in the tools/hisat2 file that when hisat2 is executed it does not include the -U command that includes the unpaired reads that were placed in a separate file after trimmomatic. Just curious ...
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Opened by spficklin
Oct 25, 2016 - 4 comments
Workflow Failing
We have several workflows that are failing. Here is a list of some of the errors from different jobs that are occurring: =============================sra-download_ID0000007============================= ...
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Opened by spficklin
Oct 23, 2016 - 5 comments
Workflow Failing when using Login01 to submit
The test workflow is failing when I submit it from the login01 node. error file: /local-scratch/wpoehlm/workflows/osg-gem-1476974120/workflow/osg-gem-1476974120/00/00/dax-level-2_ID0000003.err.002 -------------------Task ...
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Opened by wpoehlm
Oct 20, 2016 - 1 comment
Create SSH key as part of submit?
So in my rush to get the pipeline running I completely skipped over the step for creating the SSH key (thanks Will for the correction). This isn't an urgent thing but would it be possible to have ...
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Opened by spficklin
Sep 30, 2016 - 1 comment
Issue a stable release?
Can you issue a stable release version of OSG-GEM?
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Opened by spficklin
Sep 28, 2016 - 2 comments
monitord Failing
I'm getting the following error message in the monitord log files when running OSG-GEM. The workflow doesn't seem to work for me :-/ ... so, I'm digging into it. This may not be related bu ...
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Opened by spficklin
Sep 28, 2016 - 2 comments
Pegasus 4.7 in local home directory of rynge
I'm trying to run OSG-GEM and it seems that Pegasus version 4.7 is housed in a home directory: /home/rynge/software/pegasus-4.7.0dev/bin Shouldn't this be a global module that can be loaded? ...
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Opened by spficklin
Sep 28, 2016 - 4 comments
include input and task files
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Opened by wpoehlm
Mar 16, 2016