Quartet Sampling method for phylogenetic branch support evaluation
Python Shell
Switch branches/tags
Nothing to show
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Failed to load latest commit information.
doc
pysrc
test
.gitignore
LICENSE
README.md
quartetsampling.pdf

README.md

Quartet Sampling

Quartet Sampling is a method to analyze molecular phylogenies by calculating branch support using repeated sampling of quartets. Quartet Sampling differs from other support methods by combining a set of of tests into a single, efficient framework to address phylogenetic discordance. QS is particularly useful for very largv and data-sparse aligmments or large phylogenomic datasets.

Usage

See the manual for Quartet Sampling (https://github.com/FePhyFoFum/quartetsampling/blob/master/quartetsampling.pdf).

How to Cite

Quartet Sampling distinguishes lack of support from conflicting support in the plant tree of life James B Pease, Joseph W Brown, Joseph F Walker, Cody E Hinchliff, Stephen A Smith bioRxiv 148536; doi: https://doi.org/10.1101/148536

Please also include the URL (https://www.github.com/fephyfofum/quartetsampling).

Contributors

License

This file is part of 'quartetsampling'

'quartetsampling' is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

'quartetsampling' is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with Foobar. If not, see (http://www.gnu.org/licenses/).