@fhcrc

FHCRC Computational Biology

Python 1 1

deenurp

De-novo selection of reference sequences

Updated Aug 25, 2016

Python 13 3

taxtastic

Create and maintain phylogenetic "reference packages" of biological sequences.

Updated Aug 9, 2016

Python 48 7

seqmagick

An imagemagick-like frontend to Biopython SeqIO

Updated Jun 1, 2016

Python 14 3

nestly

Make and use nested directory trees corresponding to combinatorial choices of parameters

Updated Dec 11, 2015

ampliconnoise

A python front end for Chris Quince's AmpliconNoise c code

Updated Jul 2, 2015

Python 1 0

biopy

Automatically exported from code.google.com/p/biopy

Updated Mar 14, 2015

prepdrm

Analysis pipeline for identifying low frequency drug resistance mutations (DRMs) in samples from the Partners PrEP study

Updated Jun 30, 2014

Python 1 0

mutgen

Generate mutations under a motif based mutation model

Updated Jun 19, 2014

mcl

Graph clustering by flow simulation

Updated May 12, 2014

Shell 5 1

microbiome-demo

Demonstration files and scripts for our high-throughput sequencing analysis pipeline

Updated Feb 11, 2014

Python 1 0

sekhon_fisher

Python implementation of Sekhon's Bayesian alternative to Fisher's exact test

Updated Oct 25, 2012