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FHCRC Computational Biology

FHCRC Computational Biology

Python 11 3

taxtastic

Create and maintain phylogenetic "reference packages" of biological sequences.

Updated

lcfit

Likelihood curve fitting under the binary symmetric model

Updated

Python 28 4

seqmagick

An imagemagick-like frontend to Biopython SeqIO

Updated

prepdrm

Analysis pipeline for identifying low frequency drug resistance mutations (DRMs) in samples from the Partners PrEP study

Updated

Python 2 0

hyperfreq

Bayesian tool for APOBEC hypermutation analysis

Updated

Python 1 1

deenurp

De-novo selection of reference sequences

Updated

Python 12 2

nestly

Make and use nested directory trees corresponding to combinatorial choices of parameters

Updated

magpie

Updated

Python 1 0

betarat

Bayesian analysis of contingency tables as the ratio of two binomially distributed random variables

Updated

Python 0 0

mutgen

Generate mutations under a motif based mutation model

Updated

Python 1 0

alnclst

A simple UCLUST-like clustering algorithm for pre-aligned sequences with built in recentering

Updated

mcl

Graph clustering by flow simulation

Updated

Shell 4 0

microbiome-demo

Demonstration files and scripts for our high-throughput sequencing analysis pipeline

Updated

pandaseq

forked from neufeld/pandaseq

PAired-eND Assembler for DNA sequences

Updated

bdes

Our fork of Chris Quince' Bayesian Diversity Estimation Software.

Updated

Python 0 94

qiime

forked from biocore/qiime

Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests

Updated

Python 1 0

sekhon_fisher

Python implementation of Sekhon's Bayesian alternative to Fisher's exact test

Updated

ampliconnoise

A python front end for Chris Quince's AmpliconNoise c code

Updated

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