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Pinned repositories

  1. bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell 733 862

  2. deeptools/deepTools

    Tools to process and analyze deep sequencing data.

    Python 266 95

  3. tanghaibao/goatools

    Python scripts to find enrichment of GO terms

    Python 196 109

  4. deeptools/HiCExplorer

    HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

    Python 41 22

  5. deeptools/HiCBrowser

    Simple web browser to visualize HiC tracks

    JavaScript 4 3

  6. sphinx-argparse

    Forked from ribozz/sphinx-argparse

    Sphinx extension that automatically document argparse commands and options


527 contributions in the last year

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Contribution activity

October 2018

Created a pull request in theislab/scanpy that received 4 comments

This PR adds a dendrogram to heatmap, matrixplot, dotplot and staked_violins plots

This PR computes a hierarchical clustering and draws a dendrogram to some of the plots. This is particularly useful when looking at marker genes from

+477 −75 4 comments

Created an issue in theislab/scanpy that received 5 comments

How to score cluster for presence of marker genes?

A frequent problem that I am faced with is to identify clusters using known lists of markers. I think that one existing approach is to first identi…


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