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Organizations

@maxplanck-ie

Pinned repositories

  1. bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell 733 862

  2. deeptools/deepTools

    Tools to process and analyze deep sequencing data.

    Python 266 95

  3. tanghaibao/goatools

    Python scripts to find enrichment of GO terms

    Python 196 109

  4. deeptools/HiCExplorer

    HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

    Python 41 22

  5. deeptools/HiCBrowser

    Simple web browser to visualize HiC tracks

    JavaScript 4 3

  6. sphinx-argparse

    Forked from ribozz/sphinx-argparse

    Sphinx extension that automatically document argparse commands and options

    Python

527 contributions in the last year

Oct Nov Dec Jan Feb Mar Apr May Jun Jul Aug Sep Oct Mon Wed Fri

Contribution activity

October 2018

Created a pull request in theislab/scanpy that received 4 comments

This PR adds a dendrogram to heatmap, matrixplot, dotplot and staked_violins plots

This PR computes a hierarchical clustering and draws a dendrogram to some of the plots. This is particularly useful when looking at marker genes from

+477 −75 4 comments

Created an issue in theislab/scanpy that received 5 comments

How to score cluster for presence of marker genes?

A frequent problem that I am faced with is to identify clusters using known lists of markers. I think that one existing approach is to first identi…

5 comments

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