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function [dataout] = ft_globalmeanfield(cfg, datain)
% FT_GLOBALMEANFIELD calculates global mean field amplitude or power of input data
%
% Use as
% [gmf] = ft_globalmeanfield(cfg, data)
%
% The data should be organised in a structure as obtained from the
% FT_TIMELOCKANALYSIS function. The configuration should be according to
% FT_PREPROCESSING function. The configuration should be according to
%
% cfg.method = string, determines whether the amplitude or power should be calculated (see below, default is 'amplitude', can be 'power')
% cfg.channel = Nx1 cell-array with selection of channels (default = 'all'),
% see FT_CHANNELSELECTION for details
%
% This function calculates the global mean field power, or amplitude,
% as described in:
% Lehmann D, Skrandies W. Reference-free identification of components of
% checkerboard-evoked multichannel potential fields. Electroencephalogr Clin
% Neurophysiol. 1980 Jun;48(6):609-21. PubMed PMID: 6155251.
%
% Please note that to calculate what is clasically referred to as Global
% Mean Field Power, cfg.method must be 'amplitude'. The naming implies a
% squared measure but this is not the case.
%
% To facilitate data-handling and distributed computing you can use
% cfg.inputfile = ...
% cfg.outputfile = ...
% If you specify one of these (or both) the input data will be read from a *.mat
% file on disk and/or the output data will be written to a *.mat file. These mat
% files should contain only a single variable, corresponding with the
% input/output structure.
%
% See also FT_TIMELOCKANALYSIS
% Copyright (C) 2017, Jan-Mathijs Schoffelen
% Copyright (C) 2014, Jim Herring, Robert Oostenveld
%
% This file is part of FieldTrip, see http://www.fieldtriptoolbox.org
% for the documentation and details.
%
% FieldTrip is free software: you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation, either version 3 of the License, or
% (at your option) any later version.
%
% FieldTrip is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
% GNU General Public License for more details.
%
% You should have received a copy of the GNU General Public License
% along with FieldTrip. If not, see <http://www.gnu.org/licenses/>.
%
% $Id$
% these are used by the ft_preamble/ft_postamble function and scripts
ft_revision = '$Id$';
ft_nargin = nargin;
ft_nargout = nargout;
% do the general setup of the function
ft_defaults
ft_preamble init
ft_preamble debug
ft_preamble loadvar datain
ft_preamble provenance datain
ft_preamble trackconfig
% the ft_abort variable is set to true or false in ft_preamble_init
if ft_abort
% do not continue function execution in case the outputfile is present and the user indicated to keep it
return
end
% ensure that the input data is valid for this function, this will also do
% backward-compatibility conversions of old data that for example was
% read from an old *.mat file
datain = ft_checkdata(datain, 'datatype', {'timelock'}, 'feedback', 'yes', 'hassampleinfo', 'yes');
% check if the input cfg is valid for this function
cfg = ft_checkconfig(cfg, 'forbidden', {'channels'}); % prevent accidental typos, see issue 1729
% set the defaults
cfg.method = ft_getopt(cfg, 'method', 'amplitude');
% select channels and trials of interest, by default this will select all channels and trials
tmpcfg = keepfields(cfg, {'trials', 'channel', 'tolerance', 'showcallinfo', 'trackcallinfo', 'trackconfig', 'trackusage', 'trackdatainfo', 'trackmeminfo', 'tracktimeinfo'});
datain = ft_selectdata(tmpcfg, datain);
% restore the provenance information
[cfg, datain] = rollback_provenance(cfg, datain);
dataout = keepfields(datain, {'avg','time','label','dimord','cfg'});
switch cfg.method
case 'amplitude'
dataout.avg = std(dataout.avg,1);
case 'power'
dataout.avg = std(dataout.avg,1).^2;
otherwise
ft_error('unsupported method');
end
dataout.label = {'gmfp'};
% this might involve more active checking of whether the input options
% are consistent with the data and with each other
% do the general cleanup and bookkeeping at the end of the function
ft_postamble debug
ft_postamble trackconfig
ft_postamble previous datain
ft_postamble provenance dataout
ft_postamble history dataout
ft_postamble savevar dataout