ImageJ/Fiji plugin to analyze 2D and 3D skeleton images
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README.md

AnalyzeSkeleton

This plugin tags all pixel/voxels in a skeleton image and then counts all its junctions, triple and quadruple points and branches, and measures their average and maximum length. The tags are shown in a new window displaying every tag in a different color. You can find it under Plugins>Skeleton>Analyze Skeleton (2D/3D).

For further details, please see the: