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FilamentDetector

DOI

FilamentDetector is a Fiji plugin that allows easy, fast and accurate detection and tracking of biological filaments. It comes with a bunch of ready-to-use modules to analyze filaments. FilamentDetector is also extensible which means that you can plug your own algorithm to detect, track and/or analyze filaments.

ImageJ wiki page: https://imagej.net/FilamentDetector.

Installation

FilamentDetector is included with Fiji. Just open your image, then start the plugin with Plugins ► Tracking ► FilamentDetector.

How to cite

Since there is no published article about FilamentDetector at the moment you can use the DOI generated by Zenodo to cite FilamentDetector in your work: https://doi.org/10.5281/zenodo.2544848

Screenshots

Preprocess images

Screenshot of FilamentDetector

Detect filaments

Screenshot of FilamentDetector

Track filaments

Screenshot of FilamentDetector

Generate kymographs

Screenshot of FilamentDetector

Run more analysis

Screenshot of FilamentDetector

Authors

FilamentDetector has been created by Hadrien Mary.

This work started in 2016 at the Gary Brouhard laboratory at the University of McGill.

License

MIT. See LICENSE.txt

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A Fiji plugin that allows easy, fast and accurate detection and tracking of biological filaments.

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