FilamentDetector is a Fiji plugin that allows easy, fast and accurate detection and tracking of biological filaments. It comes with a bunch of ready-to-use modules to analyze filaments.
FilamentDetector is also extensible which means that you can plug your own algorithm to detect, track and/or analyze filaments.
ImageJ wiki page: https://imagej.net/FilamentDetector.
FilamentDetector is included with Fiji. Just open your image,
then start the plugin with
Plugins ► Tracking ► FilamentDetector.
How to cite
Since there is no published article about
FilamentDetector at the moment you can use the DOI generated by Zenodo to cite
FilamentDetector in your work: https://doi.org/10.5281/zenodo.2544848
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FilamentDetector has been created by Hadrien Mary.
This work started in 2016 at the Gary Brouhard laboratory at the University of McGill.
MIT. See LICENSE.txt