FilamentDetector is a Fiji plugin that allows easy, fast and accurate detection and tracking of biological filaments. It comes with a bunch of ready-to-use modules to analyze filaments. FilamentDetector is also extensible which means that you can plug your own algorithm to detect, track and/or analyze filaments.
ImageJ wiki page: https://imagej.net/FilamentDetector.
FilamentDetector is included with Fiji. Just open your image,
then start the plugin with Plugins ► Tracking ► FilamentDetector.
Since there is no published article about FilamentDetector at the moment you can use the DOI generated by Zenodo to cite FilamentDetector in your work: https://doi.org/10.5281/zenodo.2544848
FilamentDetector has been created by Hadrien Mary.
This work started in 2016 at the Gary Brouhard laboratory at the University of McGill.
MIT. See LICENSE.txt