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Update .gitignore after recent cleanups

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
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1 parent 569fa8a commit 8f4d285422e288f8f6a0c56c066e602a436443e3 @dscho dscho committed
Showing with 89 additions and 159 deletions.
  1. +89 −159 .gitignore
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248 .gitignore
@@ -1,60 +1,64 @@
-*$py.class
-*-stamp
+# Editors #
*.swp
*~
-.DS_Store
+
+# Maven #
+/bin/apache-maven-*/
+/src-plugins/*/target/
+
+# Fiji Build #
+/build/
+
+# Eclipse #
.checksums
.metadata
.project
.classpath
.settings/
+
+# ImageJ 1.x #
+/IJ_Prefs.txt
+
+# Updater #
+/db.xml.gz
+
+# Cached sample images #
+/samples/
+
+# ImageJ Launcher #
+/jvm.cfg
+
+# MacOSX #
+.DS_Store
+/Mac-Finder-DSStore-0.94
+
+# Windows #
+/bin/RCEDIT.exe
+
+# Wiki monitor #
/.recent-changes.*
+
+# Micro-Manager #
+*-stamp
/CoreLog.txt
-/Fiji.app
-/IJ_Prefs.txt
+hs_err*.log
/MMConfig_demo.cfg
/MMStartup.bsh
-/Mac-Finder-DSStore-0.94
-/bin/RCEDIT.exe
-/bin/apache-maven-*/
-/build.xml
-/build/
-/chroot-*-i386
-/db.xml.gz
-/eclipse/
+/mmgr_dal_*
+
+# Jython #
+*$py.class
+
+# Package Maker #
/fiji-*.7z
/fiji-*.dmg
/fiji-*.tar.bz2
/fiji-*.zip
/fiji-macosx.dmg
-/full-nightly-build/
-/intellij/
-/jars/cachedir
-/jars/javac.jar
-/jvm.cfg
-/livecd
-/make-targets
-/mmgr_dal_*
-/netbeans/
-/nightly-build/
-/root-x86_64-pc-linux
-/samples/
-/src-plugins/*/target/
-/src-plugins/Fiji/icon.png
-/src-plugins/Script_Editor/function.png
-/src-plugins/Script_Editor/icon.png
-/src-plugins/Script_Editor/var.png
-/src-plugins/VIB-lib/math3d/Eigensystem2x2Float.java
-/src-plugins/VIB-lib/math3d/Eigensystem3x3Float.java
-/src-plugins/VIB-lib/math3d/FloatMatrixN.java
-/src-plugins/VIB-lib/math3d/JacobiFloat.java
-/src-plugins/VIB-lib/vib/FloatMatrix.java
-/src-plugins/fiji-compat/icon.png
-/src-plugins/fiji-lib/help-cursor.gif
+
+# Tests
/tests/plugins
/tests/sample-data/
-/tmp.ijm
-hs_err*.log
# Launchers #
/Contents/MacOS/ImageJ-macosx
@@ -80,76 +84,20 @@ hs_err*.log
/fiji.exe
# Files generated from sources in src-plugins/ #
-/bin/apache-maven-*/
-/jars/Fiji.jar
-/jars/Jama-1.0.2.jar
/jars/Jama.jar
/jars/VIB-lib.jar
-/jars/VectorString.jar
-/jars/autocomplete.jar
-/jars/batik.jar
-/jars/clojure.jar
-/jars/commons-math.jar
/jars/fake.jar
/jars/fiji-compat.jar
/jars/fiji-lib.jar
/jars/fiji-scripting.jar
-/jars/ij-launcher.jar
-/jars/ij.jar
/jars/imagescience.jar
/jars/imageware.jar
-/jars/imglib-algorithms.jar
-/jars/imglib-ij.jar
-/jars/imglib-io.jar
-/jars/imglib-scripting.jar
-/jars/imglib.jar
-/jars/jacl.jar
-/jars/jars/ij-awt-common.jar
-/jars/jars/ij-core-plugins.jar
-/jars/jars/ij-core-tools.jar
-/jars/jars/ij-core.jar
-/jars/jars/ij-data.jar
-/jars/jars/ij-display.jar
-/jars/jars/ij-event.jar
-/jars/jars/ij-imagej.jar
-/jars/jars/ij-legacy.jar
-/jars/jars/ij-module.jar
-/jars/jars/ij-object.jar
-/jars/jars/ij-platform-macosx.jar
-/jars/jars/ij-platform.jar
-/jars/jars/ij-plugin-swing.jar
-/jars/jars/ij-plugin.jar
-/jars/jars/ij-tool.jar
-/jars/jars/ij-ui-swing.jar
-/jars/jars/ij-ui.jar
/jars/javac.jar
-/jars/javassist.jar
/jars/jep.jar
-/jars/jsch-0.1.44.jar
-/jars/jsch.jar
-/jars/junit-4.5.jar
-/jars/junit.jar
-/jars/jython.jar
/jars/mij.jar
-/jars/mpicbg.jar
/jars/pal-optimization.jar
-/jars/rsyntaxtextarea.jar
-/jars/test-fiji.jar
/jars/wavelets.jar
/jars/weave_jy2java.jar
-/jars/weka.jar
-/jars/zs.jar
-/lib/linux32/libJNI_Example.so
-/lib/linux32/libffmpeg.so
-/lib/linux64/libJNI_Example.so
-/lib/linux64/libffmpeg.so
-/lib/macosx/libJNI_Example.dylib
-/lib/macosx/libffmpeg.dylib
-/lib/win32/JNI_Example.dll
-/lib/win32/ffmpeg.dll
-/lib/win64/JNI_Example.dll
-/lib/win64/ffmpeg.dll
-/misc/headless.jar
/plugins/3D_Blob_Segmentation.jar
/plugins/3D_Objects_Counter.jar
/plugins/3D_Viewer.jar
@@ -177,7 +125,6 @@ hs_err*.log
/plugins/Differentials_.jar
/plugins/Directionality_.jar
/plugins/Extended_Depth_Field.jar
-/plugins/FFMPEG_IO.jar
/plugins/FS_Align_TrakEM2.jar
/plugins/FeatureJ_.jar
/plugins/Feature_Detection.jar
@@ -191,11 +138,9 @@ hs_err*.log
/plugins/Helmholtz_Analysis.jar
/plugins/IJ_Robot.jar
/plugins/IO_.jar
-/plugins/Image_5D.jar
/plugins/Image_Expression_Parser.jar
/plugins/Interactive_3D_Surface_Plot.jar
/plugins/IsoData_Classifier.jar
-/plugins/JNI_Example.jar
/plugins/JRuby_Interpreter.jar
/plugins/Javascript_.jar
/plugins/Jython_Interpreter.jar
@@ -240,7 +185,6 @@ hs_err*.log
/plugins/TopoJ_.jar
/plugins/TrackMate_.jar
/plugins/Trainable_Segmentation.jar
-/plugins/TrakEM2_.jar
/plugins/TransformJ_.jar
/plugins/TurboReg_.jar
/plugins/UnwarpJ_.jar
@@ -250,71 +194,57 @@ hs_err*.log
/plugins/Volume_Viewer.jar
/plugins/bUnwarpJ_.jar
/plugins/blockmatching_.jar
-/plugins/ij-ImageIO_.jar
/plugins/level_sets.jar
-/plugins/loci_tools.jar
-*-stamp
-/jars/clojure.jar
-/plugins/IJ_Robot.jar
-/plugins/Fiji_Updater.jar
-/plugins/Stitching_.jar
-/plugins/AnalyzeSkeleton_.jar
-/plugins/Skeletonize3D_.jar
-/jars/jacl.jar
-/jars/batik.jar
-/jars/fiji-scripting.jar
-/plugins/TurboReg_.jar
-/plugins/Fiji_Plugins.jar
-/plugins/ToAST_.jar
-/jars/junit.jar
-/plugins/MTrack2_.jar
-/plugins/Time_Stamper.jar
-/plugins/Series_Labeler.jar
-/plugins/Statistical_Region_Merging.jar
-/plugins/Refresh_Javas.jar
-/plugins/Auto_Threshold.jar
-/plugins/Arrow_.jar
-/plugins/Stack_Manipulation.jar
-/plugins/FlowJ_.jar
-/plugins/PIV_analyser.jar
-/plugins/Video_Editing.jar
-/jars/zs.jar
-/plugins/Sync_Win.jar
-/jars/rsyntaxtextarea.jar
+/plugins/panorama_.jar
+/plugins/register_virtual_stack_slices.jar
+/plugins/registration_3d.jar
+
+# Files generated from submodules #
+/jars/VectorString.jar
/jars/autocomplete.jar
-/plugins/Gray_Morphology.jar
-/plugins/Colocalisation_Analysis.jar
-/plugins/LocalThickness_.jar
-/plugins/Fiji_Developer.jar
-/jars/test-fiji.jar
-/plugins/Manual_Tracking.jar
-/plugins/Calculator_Plus.jar
-/plugins/Script_Editor.jar
-/plugins/3D_Objects_Counter.jar
-/plugins/Trainable_Segmentation.jar
-/jars/weka.jar
-/plugins/IsoData_Classifier.jar
-/plugins/RATS_.jar
+/jars/batik.jar
+/jars/ij-launcher.jar
+/jars/ij.jar
/jars/jython.jar
-/jars/VectorString.jar
-/jars/fiji-lib.jar
-/jars/jep.jar
-/plugins/Siox_Segmentation.jar
-/plugins/Directionality_.jar
-/jars/Jama.jar
/jars/mpicbg.jar
-/plugins/Image_Expression_Parser.jar
-/plugins/Algorithm_Launcher.jar
-/jars/VIB-lib.jar
-/src-plugins/Script_Editor/function.png
-/src-plugins/Script_Editor/icon.png
-/src-plugins/Script_Editor/var.png
-/jars/pal-optimization.jar
-/plugins/Anisotropic_Diffusion_2D.jar
+/jars/rsyntaxtextarea.jar
+/plugins/Image_5D.jar
+/plugins/TrakEM2_.jar
+/plugins/ij-ImageIO_.jar
+/plugins/loci_tools.jar
/plugins/mpicbg_.jar
-/plugins/panorama_.jar
-/plugins/register_virtual_stack_slices.jar
-/plugins/registration_3d.jar
+
+# Dependencies copied by MiniMaven #
+/jars/bsh.jar
+/jars/clibwrapper_jiio.jar
+/jars/clojure.jar
+/jars/commons-math.jar
+/jars/itextpdf.jar
+/jars/j3d-core-utils.jar
+/jars/j3d-core.jar
+/jars/jai_codec.jar
+/jars/jama.jar
+/jars/java-cup.jar
+/jars/javassist.jar
+/jars/jcommon.jar
+/jars/jdom-contrib.jar
+/jars/jdom.jar
+/jars/jfreechart.jar
+/jars/jgrapht-jdk1.6.jar
+/jars/jgraphx.jar
+/jars/jna.jar
+/jars/jpedalSTD.jar
+/jars/jruby.jar
+/jars/js.jar
+/jars/jsch.jar
+/jars/junit.jar
+/jars/jzlib.jar
+/jars/mines-jtk.jar
+/jars/pentaho-package-manager.jar
+/jars/tools.jar
+/jars/vecmath.jar
+/jars/weka-dev.jar
+/plugins/loci_plugins.jar
# For use by bin/gitignore-in-submodules #
/modules/AutoComplete/ant-classes/

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