fish_update_completions script is not being run after installing fish through Linux and OS X packages. This means that user would not get completions that can be generated through this command. Should it be run by default after installing fish through packages ?
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Sounds like a good idea. fish_update_completions is probably the wrong command as that only works for home directories, and we have to be careful in packages about creating files that we then don't remove.
We distribute packages (and in fact most of my work on fish recently has been the packaging infrastructure), and our packages should demonstrate "best practice" which would include using all the features of fish in a way that is consistent with packaging guidelines.