From 59523a6caf734ba3364234e8b50f0e98a47b9b1b Mon Sep 17 00:00:00 2001
From: Derek Ogle <droglenc@users.noreply.github.com>
Date: Thu, 25 Jul 2019 08:18:21 -0500
Subject: [PATCH] Trying to remove asbio suggests

---
 DESCRIPTION                        | 1 -
 R/dunnTest.R                       | 2 +-
 man/dunnTest.Rd                    | 2 +-
 tests/testthat/testthat_dunnTest.R | 9 ---------
 4 files changed, 2 insertions(+), 12 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 90a9d3c7..d9eb6f7b 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -35,7 +35,6 @@ Imports:
     sciplot,
     withr
 Suggests:
-    asbio,
     DescTools,
     fishmethods,
     FSAdata,
diff --git a/R/dunnTest.R b/R/dunnTest.R
index e6d5dac9..7e787a81 100644
--- a/R/dunnTest.R
+++ b/R/dunnTest.R
@@ -12,7 +12,7 @@
 #' 
 #' The results from \code{DunnTest} match the results (in a different format) from the \code{\link[dunn.test]{dunn.test}} function from \pkg{dunn.test}.
 #' 
-#' The \code{\link[asbio]{pairw.kw}} function from the \pkg{asbio} package performs the Dunn test with the Bonferroni correction. The \code{\link[asbio]{pairw.kw}} also provides a confidence interval for the difference in mean ranks between pairs of groups. The p-value results from \code{DunnTest} match the results from \code{\link[asbio]{pairw.kw}}.
+#' The \code{pairw.kw} function from the \pkg{asbio} package performs the Dunn test with the Bonferroni correction. The \code{pairw.kw} also provides a confidence interval for the difference in mean ranks between pairs of groups. The p-value results from \code{DunnTest} match the results from \code{pairw.kw}.
 #' 
 #' The \code{\link[PMCMR]{posthoc.kruskal.nemenyi.test}} function from the \pkg{PMCMR} package uses the \dQuote{Nemenyi} (1963) method of multiple comparisons.
 #' 
diff --git a/man/dunnTest.Rd b/man/dunnTest.Rd
index 8c7f81e1..e7eab6d8 100644
--- a/man/dunnTest.Rd
+++ b/man/dunnTest.Rd
@@ -60,7 +60,7 @@ There are a number of functions in other packages that do similar analyses.
 
 The results from \code{DunnTest} match the results (in a different format) from the \code{\link[dunn.test]{dunn.test}} function from \pkg{dunn.test}.
 
-The \code{\link[asbio]{pairw.kw}} function from the \pkg{asbio} package performs the Dunn test with the Bonferroni correction. The \code{\link[asbio]{pairw.kw}} also provides a confidence interval for the difference in mean ranks between pairs of groups. The p-value results from \code{DunnTest} match the results from \code{\link[asbio]{pairw.kw}}.
+The \code{pairw.kw} function from the \pkg{asbio} package performs the Dunn test with the Bonferroni correction. The \code{pairw.kw} also provides a confidence interval for the difference in mean ranks between pairs of groups. The p-value results from \code{DunnTest} match the results from \code{pairw.kw}.
 
 The \code{\link[PMCMR]{posthoc.kruskal.nemenyi.test}} function from the \pkg{PMCMR} package uses the \dQuote{Nemenyi} (1963) method of multiple comparisons.
 
diff --git a/tests/testthat/testthat_dunnTest.R b/tests/testthat/testthat_dunnTest.R
index 18269dc5..20298340 100644
--- a/tests/testthat/testthat_dunnTest.R
+++ b/tests/testthat/testthat_dunnTest.R
@@ -152,12 +152,3 @@ test_that("dunnTest matches dunn.test results for airquality data",{
     }
   } # end require()
 })
-
-test_that("dunnTest matches pairw.kw results",{
-  if (require(asbio)) {
-    ## unadjusted p-values
-    tmp  <- dunnTest(pH~fpond,data=ponds,method="bonferroni")$res$P.adj
-    tmp2 <- fact2num(pairw.kw(ponds$pH,ponds$fpond)$summary$'Adj. P-value')
-    expect_equivalent(round(tmp,6),tmp2)    
-  } # end require()
-})