diff --git a/DESCRIPTION b/DESCRIPTION index c48771b..9af8b83 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: FSAdata Title: Data to Support Fish Stock Assessment ('FSA') Package Version: 0.3.6 -Date: 2016-12-13 +Date: 2017-3-11 Description: The datasets to support the Fish Stock Assessment ('FSA') package. Authors@R: person("Derek","Ogle",email="derek@derekogle.com",role=c("aut","cre")) URL: http://derekogle.com/fishR/, https://github.com/droglenc/FSAdata @@ -10,4 +10,4 @@ License: GPL (>= 2) LazyData: true Depends: R (>= 3.0.0) -RoxygenNote: 5.0.1 +RoxygenNote: 6.0.1 diff --git a/cran-comments/cran-comments_v0_3_6.md b/cran-comments/cran-comments_v0_3_6.md new file mode 100644 index 0000000..ba68071 --- /dev/null +++ b/cran-comments/cran-comments_v0_3_6.md @@ -0,0 +1,9 @@ +* This updates the existing FSAdata package on CRAN. + +## Notes +* There is a note about "datasets" being misspelled in the description. I do not consider "datasets" to be misspelled. + +## Testing Environments +* My Windows machine. +* Win Builder -- current and development. +* Travis-CI. \ No newline at end of file diff --git a/man/AHerringChile.Rd b/man/AHerringChile.Rd index 5d75c06..04ce1ec 100644 --- a/man/AHerringChile.Rd +++ b/man/AHerringChile.Rd @@ -24,6 +24,7 @@ Ages and lengths of Araucanian Herring (\emph{Strangomera bentincki}) from Chile \item Somers model } } + \examples{ data(AHerringChile) str(AHerringChile) @@ -35,4 +36,3 @@ plot(len~age,data=AHerringChile) 'Seasonal Growth' 'von Bertalanffy' Somers } \keyword{datasets} - diff --git a/man/AfricanRivers.Rd b/man/AfricanRivers.Rd index e0d0de5..db35805 100644 --- a/man/AfricanRivers.Rd +++ b/man/AfricanRivers.Rd @@ -25,6 +25,7 @@ Characteristics of a sample of West African rivers. \item Other } } + \examples{ data(AfricanRivers) str(AfricanRivers) @@ -35,4 +36,3 @@ head(AfricanRivers) Other } \keyword{datasets} - diff --git a/man/AlewifeLH.Rd b/man/AlewifeLH.Rd index 3100e74..d2ddfe4 100644 --- a/man/AlewifeLH.Rd +++ b/man/AlewifeLH.Rd @@ -24,6 +24,7 @@ Ages of Alewife (\emph{Alosa pseudoharengus}) assessed from otoliths and scales. \item Ageing Error } } + \examples{ data(AlewifeLH) str(AlewifeLH) @@ -36,4 +37,3 @@ xtabs(~otoliths+scales,data=AlewifeLH) Age Precision Bias 'Age Comparison' } \keyword{datasets} - diff --git a/man/AnchovetaChile.Rd b/man/AnchovetaChile.Rd index 78f01d4..e6dce91 100644 --- a/man/AnchovetaChile.Rd +++ b/man/AnchovetaChile.Rd @@ -25,6 +25,7 @@ Ages (in months) and lengths of Anchoveta (\emph{Engraulis ringens}) from centra \item Somers model } } + \examples{ data(AnchovetaChile) str(AnchovetaChile) @@ -37,4 +38,3 @@ plot(tl.cm~age,data=AnchovetaChile) 'Seasonal Growth' 'von Bertalanffy' Somers } \keyword{datasets} - diff --git a/man/BGHRfish.Rd b/man/BGHRfish.Rd index e911f56..c1f9c3c 100644 --- a/man/BGHRfish.Rd +++ b/man/BGHRfish.Rd @@ -28,6 +28,7 @@ Used in the \href{http://derekogle.com/IFAR/}{Introductory Fisheries Analyses wi \item Data Manipulation } } + \examples{ data(BGHRfish) str(BGHRfish) @@ -41,4 +42,3 @@ See \code{\link{BGHRfish}} for individual fish collected in these samples. 'Data Manipulation' } \keyword{datasets} - diff --git a/man/BGHRsample.Rd b/man/BGHRsample.Rd index 34c468b..58ddcc5 100644 --- a/man/BGHRsample.Rd +++ b/man/BGHRsample.Rd @@ -26,6 +26,7 @@ Used in the \href{http://derekogle.com/IFAR/}{Introductory Fisheries Analyses wi \item Data Manipulation } } + \examples{ data(BGHRsample) str(BGHRsample) @@ -39,4 +40,3 @@ See \code{\link{BGHRfish}} for individual fish collected in these samples. 'Data Manipulation' } \keyword{datasets} - diff --git a/man/BSkateGB.Rd b/man/BSkateGB.Rd index 68522f1..44f0549 100644 --- a/man/BSkateGB.Rd +++ b/man/BSkateGB.Rd @@ -27,6 +27,7 @@ Only years within each season where more than one spawner and more than one recr \item Recruitment } } + \examples{ data(BSkateGB) str(BSkateGB) @@ -45,4 +46,3 @@ par(op) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/BassFL.Rd b/man/BassFL.Rd index d1adcd7..a89f70b 100644 --- a/man/BassFL.Rd +++ b/man/BassFL.Rd @@ -25,6 +25,7 @@ Catch-at-age for Suwanee (\emph{Micropterus notius}) and Largemouth Bass (\emph{ \item Catch curve } } + \examples{ data(BassFL) str(BassFL) @@ -55,4 +56,3 @@ par(op) Mortality 'Catch Curve' } \keyword{datasets} - diff --git a/man/BlackDrum2001.Rd b/man/BlackDrum2001.Rd index 6d22c1f..dcc63df 100644 --- a/man/BlackDrum2001.Rd +++ b/man/BlackDrum2001.Rd @@ -33,6 +33,7 @@ Used in the \href{http://derekogle.com/IFAR/}{Introductory Fisheries Analyses wi \item Weight-Length } } + \examples{ data(BlackDrum2001) str(BlackDrum2001) @@ -44,4 +45,3 @@ plot(tl~otoage,data=BlackDrum2001) Growth 'von Bertalanffy' 'Weight-Length' } \keyword{datasets} - diff --git a/man/BloaterLH.Rd b/man/BloaterLH.Rd index 34350c2..2025a4f 100644 --- a/man/BloaterLH.Rd +++ b/man/BloaterLH.Rd @@ -23,6 +23,7 @@ Egg deposition and relative abundance of age-3 Lake Huron Bloaters (\emph{Corego \item Recruitment } } + \examples{ data(BloaterLH) str(BloaterLH) @@ -37,4 +38,3 @@ par(op) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/BlueCatfish.Rd b/man/BlueCatfish.Rd index 5225937..5ec994d 100644 --- a/man/BlueCatfish.Rd +++ b/man/BlueCatfish.Rd @@ -22,6 +22,7 @@ Ages and total lengths of Blue Catfish (\emph{Ictalurus furcatus}) collected for \item von Bertalanffy } } + \examples{ data(BlueCatfish) str(BlueCatfish) @@ -33,4 +34,3 @@ plot(tl~age,data=BlueCatfish) Growth 'von Bertalanffy' } \keyword{datasets} - diff --git a/man/BlueCrab.Rd b/man/BlueCrab.Rd index fbe7b0b..c9c1b40 100644 --- a/man/BlueCrab.Rd +++ b/man/BlueCrab.Rd @@ -26,6 +26,7 @@ Catch and effort data for a population of male Blue Crabs (\emph{Callinectes sap \item Catchability } } + \examples{ data(BlueCrab) str(BlueCrab) @@ -36,4 +37,3 @@ BlueCrab Abundance 'Population Size' Leslie DeLury Depletion Catchability } \keyword{datasets} - diff --git a/man/BluefishAge.Rd b/man/BluefishAge.Rd index 2e5ee0b..332d29a 100644 --- a/man/BluefishAge.Rd +++ b/man/BluefishAge.Rd @@ -23,6 +23,7 @@ Ages assigned to Bluefish (\emph{Pomatomus saltatrix}) otoliths by two readers. \item Ageing Error } } + \examples{ data(BluefishAge) str(BluefishAge) @@ -34,4 +35,3 @@ plot(r1~r2,data=BluefishAge) Age Precision Bias 'Age Comparison' } \keyword{datasets} - diff --git a/man/BluegillIL.Rd b/man/BluegillIL.Rd index ca1492c..373531d 100644 --- a/man/BluegillIL.Rd +++ b/man/BluegillIL.Rd @@ -26,6 +26,7 @@ Length-at-marking and recapture and time-at-large for Bluegill (\emph{Lepomis ma \item Fabens method } } + \examples{ data(BluegillIL) str(BluegillIL) @@ -37,4 +38,3 @@ plot((lenRecap-lenMark)~deltaTime,data=BluegillIL) Growth 'von Bertalanffy' Fabens } \keyword{datasets} - diff --git a/man/BluegillLM.Rd b/man/BluegillLM.Rd index b232893..23a599e 100644 --- a/man/BluegillLM.Rd +++ b/man/BluegillLM.Rd @@ -23,6 +23,7 @@ Lengths (standard, fork, and total) and weights for Bluegill (\emph{Lepomis macr \item Length Frequency } } + \examples{ data(BluegillLM) str(BluegillLM) @@ -43,4 +44,3 @@ par(op) 'Weight-Length' 'Length Conversion' 'Length Frequency' } \keyword{datasets} - diff --git a/man/BluntnoseIL1.Rd b/man/BluntnoseIL1.Rd index 940ed93..82d7431 100644 --- a/man/BluntnoseIL1.Rd +++ b/man/BluntnoseIL1.Rd @@ -25,6 +25,7 @@ Total lengths for a subsample from 144 Bluntnose Minnows (\emph{Pimephales notat \item PSD } } + \examples{ data(BluntnoseIL1) str(BluntnoseIL1) @@ -38,4 +39,3 @@ head(BluntnoseIL1) 'Length Frequency' 'Size Structure' PSD 'Length Expansion' } \keyword{datasets} - diff --git a/man/Bonito.Rd b/man/Bonito.Rd index 55c19db..845e9b4 100644 --- a/man/Bonito.Rd +++ b/man/Bonito.Rd @@ -25,6 +25,7 @@ Ages and lengths of Australian Bonito (\emph{Sarda australis}). \item Somers model } } + \examples{ data(Bonito) str(Bonito) @@ -36,4 +37,3 @@ plot(fl~age,data=Bonito) 'Seasonal Growth' 'von Bertalanffy' Somers } \keyword{datasets} - diff --git a/man/BrookTroutNC.Rd b/man/BrookTroutNC.Rd index 8553f0e..dc0899e 100644 --- a/man/BrookTroutNC.Rd +++ b/man/BrookTroutNC.Rd @@ -25,6 +25,7 @@ The authors fit a linear model to the stock-recruit relationship. \item Recruitment } } + \examples{ data(BrookTroutNC) str(BrookTroutNC) @@ -36,4 +37,3 @@ plot(adult~yoy,data=BrookTroutNC) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/BrookTroutNEWP.Rd b/man/BrookTroutNEWP.Rd index 2cf6e48..c31b92e 100644 --- a/man/BrookTroutNEWP.Rd +++ b/man/BrookTroutNEWP.Rd @@ -28,6 +28,7 @@ Catches in removal events for Brook Trout (\emph{Salvelinus fontinalis}) in two \item Removal } } + \examples{ data(BrookTroutNEWP) @@ -42,4 +43,3 @@ See \code{\link{BrookTroutNEWP1}} for these data AND the results from Schnute (1 Abundance 'Population Size' Removal } \keyword{datasets} - diff --git a/man/BrookTroutNEWP1.Rd b/man/BrookTroutNEWP1.Rd index f2dc53c..e4bf52a 100644 --- a/man/BrookTroutNEWP1.Rd +++ b/man/BrookTroutNEWP1.Rd @@ -41,6 +41,7 @@ Catches in removal events for Brook Trout (\emph{Salvelinus fontinalis}) in two \item Removal } } + \examples{ data(BrookTroutNEWP1) @@ -55,4 +56,3 @@ See \code{\link{BrookTroutNEWP}} for only the data (note the results from Schnut Abundance 'Population Size' Removal } \keyword{datasets} - diff --git a/man/BrookTroutOnt.rd b/man/BrookTroutOnt.rd index 5e5a2d3..6bc7362 100644 --- a/man/BrookTroutOnt.rd +++ b/man/BrookTroutOnt.rd @@ -28,6 +28,7 @@ The number of Brook Trout (\emph{Salvelinus fontinalis}) marked, captured, and r \item Petersen } } + \examples{ data(BrookTroutOnt) str(BrookTroutOnt) @@ -38,4 +39,3 @@ head(BrookTroutOnt) Abundance 'Population Size' 'Mark-Recapture' 'Capture-Recapture' 'Petersen' } \keyword{datasets} - diff --git a/man/BrownTroutVC1.Rd b/man/BrownTroutVC1.Rd index 606c726..4e56215 100644 --- a/man/BrownTroutVC1.Rd +++ b/man/BrownTroutVC1.Rd @@ -26,6 +26,7 @@ Single censuse mark-recapture data for Brown Trout (\emph{Salmo trutta}) from Va \item Petersen } } + \examples{ data(BrownTroutVC1) str(BrownTroutVC1) @@ -37,4 +38,3 @@ hist(BrownTroutVC1$len,main="") Abundance 'Population Size' 'Mark-Recapture' 'Capture-Recapture' 'Petersen' } \keyword{datasets} - diff --git a/man/BullTroutRML1.Rd b/man/BullTroutRML1.Rd index 4a5a638..a074645 100644 --- a/man/BullTroutRML1.Rd +++ b/man/BullTroutRML1.Rd @@ -26,6 +26,7 @@ The historical (1977-1980) era samples were from before restrictive sportfishing \item Length Frequency } } + \examples{ data(BullTroutRML1) str(BullTroutRML1) @@ -40,4 +41,3 @@ par(op) 'Weight-Length' 'Length Frequency' } \keyword{datasets} - diff --git a/man/BullTroutRML2.Rd b/man/BullTroutRML2.Rd index f48e65b..e3bbd8d 100644 --- a/man/BullTroutRML2.Rd +++ b/man/BullTroutRML2.Rd @@ -27,6 +27,7 @@ The historical (1977-1980) era samples were from before restrictive sportfishing \item Von Bertalanffy growth model } } + \examples{ data(BullTroutRML2) str(BullTroutRML2) @@ -43,4 +44,3 @@ par(op) Growth 'Von Bertalanffy' } \keyword{datasets} - diff --git a/man/BullTroutTC.Rd b/man/BullTroutTC.Rd index d740f30..c41b912 100644 --- a/man/BullTroutTC.Rd +++ b/man/BullTroutTC.Rd @@ -22,6 +22,7 @@ Catch-at-age (actually carcasses-at-age) for Bull Trout (\emph{Salvelinus conflu \item Catch curve } } + \examples{ data(BullTroutTC) str(BullTroutTC) @@ -33,4 +34,3 @@ plot(log(carcasses)~age,data=BullTroutTC) Mortality 'Catch Curve' } \keyword{datasets} - diff --git a/man/CCatfishNB.Rd b/man/CCatfishNB.Rd index ca0c3fb..3e54eaf 100644 --- a/man/CCatfishNB.Rd +++ b/man/CCatfishNB.Rd @@ -26,6 +26,7 @@ Used in the \href{http://derekogle.com/IFAR/}{Introductory Fisheries Analyses wi \item Catch curve } } + \examples{ data(CCatfishNB) str(CCatfishNB) @@ -40,4 +41,3 @@ par(op) Mortality 'Catch Curve' } \keyword{datasets} - diff --git a/man/Cabezon.rd b/man/Cabezon.rd index 6730392..04b9e8f 100644 --- a/man/Cabezon.rd +++ b/man/Cabezon.rd @@ -26,6 +26,7 @@ Ages, lengths, and maturity for female Cabezon (\emph{Scorpaenichthys marmoratus \item von Bertalanffy } } + \examples{ data(Cabezon) str(Cabezon) @@ -46,4 +47,3 @@ par(op) Growth 'von Bertalanffy' Maturity } \keyword{datasets} - diff --git a/man/Casselman1990.Rd b/man/Casselman1990.Rd index 9197cf4..3a8af05 100644 --- a/man/Casselman1990.Rd +++ b/man/Casselman1990.Rd @@ -23,6 +23,7 @@ Instantaneous growth rates (percent change per day) for body growth and two calc \item Other } } + \examples{ data(Casselman1990) @@ -42,4 +43,3 @@ legend("topleft",legend=c("Body","Cleithrum","Scale"),pch=p,col=clr,lty=l,lwd=2) Other } \keyword{datasets} - diff --git a/man/ChinookKR.Rd b/man/ChinookKR.Rd index e8c1662..d6a1b25 100644 --- a/man/ChinookKR.Rd +++ b/man/ChinookKR.Rd @@ -23,6 +23,7 @@ Stock and recruitment data for Klamath River Chinook Salmon (\emph{Oncorhynchus \item Recruitment } } + \examples{ data(ChinookKR) str(ChinookKR) @@ -37,4 +38,3 @@ par(op) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/CiscoTL.Rd b/man/CiscoTL.Rd index 69a04d7..45ec1a9 100644 --- a/man/CiscoTL.Rd +++ b/man/CiscoTL.Rd @@ -28,6 +28,7 @@ Lengths, weights, and sex for Cisco (\emph{Coregonus artedii}) from Trout Lake, \item Length Frequency } } + \examples{ data(CiscoTL) str(CiscoTL) @@ -43,4 +44,3 @@ par(op) 'Weight-Length' 'Length Frequency' } \keyword{datasets} - diff --git a/man/CrappieARMS.Rd b/man/CrappieARMS.Rd index 78ec74b..4536f4a 100644 --- a/man/CrappieARMS.Rd +++ b/man/CrappieARMS.Rd @@ -23,6 +23,7 @@ Stock and recruitment data for Crappies from four reservoirs in Arkansas and Mis \item Recruitment } } + \examples{ data(CrappieARMS) str(CrappieARMS) @@ -39,4 +40,3 @@ par(op) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/CreekChub.Rd b/man/CreekChub.Rd index e94a921..d212d2a 100644 --- a/man/CreekChub.Rd +++ b/man/CreekChub.Rd @@ -28,6 +28,7 @@ Used in the \href{http://derekogle.com/IFAR/}{Introductory Fisheries Analyses wi \item Growth } } + \examples{ data(CreekChub) str(CreekChub) @@ -40,4 +41,3 @@ plot(len~age,data=CreekChub) 'Age-Length Key' 'Growth' } \keyword{datasets} - diff --git a/man/CreelMN.rd b/man/CreelMN.rd index 36ede4f..f6bf3fe 100644 --- a/man/CreelMN.rd +++ b/man/CreelMN.rd @@ -21,6 +21,7 @@ The species targeted, number of fish harvested, and number of individuals harves \item Other } } + \examples{ data(CreelMN) str(CreelMN) @@ -56,4 +57,3 @@ levels(CreelMN$species) Other } \keyword{datasets} - diff --git a/man/Croaker1.Rd b/man/Croaker1.Rd index 67c29f2..b751e07 100644 --- a/man/Croaker1.Rd +++ b/man/Croaker1.Rd @@ -24,6 +24,7 @@ Otolith age of Atlantic croaker (\emph{Micropogonias undulatus}) from two reader \item Ageing Error } } + \examples{ data(Croaker1) str(Croaker1) @@ -36,4 +37,3 @@ xtabs(~reader1+reader2,data=Croaker1) Age Precision Bias 'Age Comparison' } \keyword{datasets} - diff --git a/man/Croaker2.Rd b/man/Croaker2.Rd index 7bca0a4..05c0a89 100644 --- a/man/Croaker2.Rd +++ b/man/Croaker2.Rd @@ -23,6 +23,7 @@ Assigned ages (by otoliths), total lengths, and sexes of Atlantic Croaker (\emph \item von Bertalanffy } } + \examples{ data(Croaker2) str(Croaker2) @@ -37,4 +38,3 @@ par(op) Growth 'von Bertalanffy' } \keyword{datasets} - diff --git a/man/CutthroatALf.Rd b/man/CutthroatALf.Rd index 336a52e..40d5856 100644 --- a/man/CutthroatALf.Rd +++ b/man/CutthroatALf.Rd @@ -26,6 +26,7 @@ Summarized (\dQuote{RMark} format) capture histories of Cutthroat Trout (\emph{O \item Capture History } } + \examples{ data(CutthroatALf) str(CutthroatALf) @@ -39,4 +40,3 @@ See \code{CutthroatAL} for the same data in \dQuote{individual} fish format (i.e Abundance 'Population Size' 'Mark-Recapture' 'Capture-Recapture' 'Jolly-Seber' 'Capture History' } \keyword{datasets} - diff --git a/man/DarterMahon.Rd b/man/DarterMahon.Rd index 8c4039e..3b14cbb 100644 --- a/man/DarterMahon.Rd +++ b/man/DarterMahon.Rd @@ -31,6 +31,7 @@ These data are used in many publications because the stream section was rotenone \item Catchability } } + \examples{ data(DarterMahon) str(DarterMahon) @@ -41,4 +42,3 @@ head(DarterMahon) Abundance 'Population Size' Leslie DeLury Depletion Catchability } \keyword{datasets} - diff --git a/man/DarterOnt.Rd b/man/DarterOnt.Rd index 84145ef..be7044a 100644 --- a/man/DarterOnt.Rd +++ b/man/DarterOnt.Rd @@ -26,6 +26,7 @@ The original author used a linear model to describe the relationship between len \item von Bertalanffy } } + \examples{ data(DarterOnt) str(DarterOnt) @@ -40,4 +41,3 @@ par(op) Growth 'von Bertalanffy' } \keyword{datasets} - diff --git a/man/Deckeretal1999.Rd b/man/Deckeretal1999.Rd index 01b3c19..47375a2 100644 --- a/man/Deckeretal1999.Rd +++ b/man/Deckeretal1999.Rd @@ -31,6 +31,7 @@ Catches of Coho Salmon (\emph{Oncorhynchus kisutch}) and Cutthroat Trout (\emph{ \item Removal } } + \examples{ data(Deckeretal1999) str(Deckeretal1999) @@ -44,4 +45,3 @@ Deckeretal1999[3,] Abundance 'Population Size' Removal } \keyword{datasets} - diff --git a/man/EuroPerchTJ.Rd b/man/EuroPerchTJ.Rd index 4a5b0a8..af7d29f 100644 --- a/man/EuroPerchTJ.Rd +++ b/man/EuroPerchTJ.Rd @@ -23,6 +23,7 @@ Assigned ages, measured fork lengths, and observed sexes for European Perch (\em \item fon Bertalanffy } } + \examples{ data(EuroPerchTJ) str(EuroPerchTJ) @@ -37,4 +38,3 @@ par(op) Growth 'von Bertalanffy' } \keyword{datasets} - diff --git a/man/FHCatfish.Rd b/man/FHCatfish.Rd index 86cf020..dffe502 100644 --- a/man/FHCatfish.Rd +++ b/man/FHCatfish.Rd @@ -23,6 +23,7 @@ Numbers of Flathead Catfish (\emph{Pylodictis olivaris}) captured by electrofish \item Catch curve } } + \examples{ data(FHCatfish) str(FHCatfish) @@ -38,4 +39,3 @@ par(op) Mortality 'Catch Curve' } \keyword{datasets} - diff --git a/man/FHCatfishATL.Rd b/man/FHCatfishATL.Rd index ccc89a4..8e20624 100644 --- a/man/FHCatfishATL.Rd +++ b/man/FHCatfishATL.Rd @@ -23,6 +23,7 @@ Catch-at-age of Flathead Catfish (\emph{Pylodictis olivaris}) from three populat \item Catch curve } } + \examples{ data(FHCatfishATL) str(FHCatfishATL) @@ -38,4 +39,3 @@ par(op) Mortality 'Catch Curve' } \keyword{datasets} - diff --git a/man/FSAdata-internals.Rd b/man/FSAdata-internals.Rd index c59c1b8..2a2ccff 100644 --- a/man/FSAdata-internals.Rd +++ b/man/FSAdata-internals.Rd @@ -10,4 +10,3 @@ Internal functions used in FSAdata. } \keyword{internal} - diff --git a/man/FSAdata.Rd b/man/FSAdata.Rd index 2d4a9ed..de03cfb 100644 --- a/man/FSAdata.Rd +++ b/man/FSAdata.Rd @@ -3,8 +3,8 @@ \docType{package} \name{FSAdata} \alias{FSAdata} -\alias{FSAdata-package} \alias{FSAdataTopics} +\alias{FSAdata-package} \title{Data to support the FSA package.} \format{An object of class \code{character} of length 16.} \usage{ @@ -45,4 +45,3 @@ The help files for these datasets are embedded with topics that can be searched Additional fisheries-related data sets are in the \code{\link[FSA]{FSA}} and \code{fishmethods} packages. } \keyword{datasets} - diff --git a/man/FWDrumLE1.Rd b/man/FWDrumLE1.Rd index a31b296..ebfff14 100644 --- a/man/FWDrumLE1.Rd +++ b/man/FWDrumLE1.Rd @@ -22,6 +22,7 @@ Assigned ages (from scales) and measured total lengths for each of 1577 Freshwat \item von Bertalanffy } } + \examples{ data(FWDrumLE1) str(FWDrumLE1) @@ -36,4 +37,3 @@ plot(tl~age,data=FWDrumLE1) Growth 'von Bertalanffy' } \keyword{datasets} - diff --git a/man/FWDrumLE2.Rd b/man/FWDrumLE2.Rd index 99eeb95..8a30b24 100644 --- a/man/FWDrumLE2.Rd +++ b/man/FWDrumLE2.Rd @@ -18,6 +18,7 @@ A total of 253 fish dispersed proportionately over 10-mm total length intervals \item Age-Length Key } } + \examples{ data(FWDrumLE2) str(FWDrumLE2) @@ -37,4 +38,3 @@ str(FWD.length) 'Age-Length Key' } \keyword{datasets} - diff --git a/man/Ghats.Rd b/man/Ghats.Rd index bd3c1e4..87fbc3c 100644 --- a/man/Ghats.Rd +++ b/man/Ghats.Rd @@ -21,6 +21,7 @@ Species accumulation data for fish of the Western Ghats of India derived from ni \item Other } } + \examples{ data(Ghats) str(Ghats) @@ -32,4 +33,3 @@ plot(cumspec~unit,data=Ghats) Other } \keyword{datasets} - diff --git a/man/GreensCreekMine.Rd b/man/GreensCreekMine.Rd index b4f655c..87f9dae 100644 --- a/man/GreensCreekMine.Rd +++ b/man/GreensCreekMine.Rd @@ -32,6 +32,7 @@ Reaches were isolated by natural features, such as shallow riffles. The sample \item Removal } } + \examples{ data(GreensCreekMine) str(GreensCreekMine) @@ -45,4 +46,3 @@ GreensCreekMine[3,] Abundance 'Population Size' Removal } \keyword{datasets} - diff --git a/man/Hake.Rd b/man/Hake.Rd index 9ed44c9..56b5f8c 100644 --- a/man/Hake.Rd +++ b/man/Hake.Rd @@ -23,6 +23,7 @@ Stock and recruitment data for Hake (\emph{Merluccius merluccius}), 1982-1996. \item Recruitment } } + \examples{ data(Hake) str(Hake) @@ -37,4 +38,3 @@ par(op) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/HalibutPAC.Rd b/man/HalibutPAC.Rd index 39fe35b..c24dc74 100644 --- a/man/HalibutPAC.Rd +++ b/man/HalibutPAC.Rd @@ -25,6 +25,7 @@ Pacific Halibut (\emph{Hippoglossus stenolepis}) stock, recruitment, landings, a \item Recruitment } } + \examples{ data(HalibutPAC) str(HalibutPAC) @@ -39,4 +40,3 @@ par(op) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/Herman.Rd b/man/Herman.Rd index d25b92e..1805e9a 100644 --- a/man/Herman.Rd +++ b/man/Herman.Rd @@ -27,6 +27,7 @@ Lake Herman was sampled on June 20-22, 2005 with four overnight gillnet sets and \item PSD } } + \examples{ data(Herman) str(Herman) @@ -44,4 +45,3 @@ par(op) 'Length Frequency' 'Size Structure' PSD } \keyword{datasets} - diff --git a/man/HerringBWE.Rd b/man/HerringBWE.Rd index 3ea1b68..11e2db4 100644 --- a/man/HerringBWE.Rd +++ b/man/HerringBWE.Rd @@ -23,6 +23,7 @@ Stock and recruitment data for Blackwater Estuary Herring (\emph{Clupea harengus \item Recruitment } } + \examples{ data(HerringBWE) str(HerringBWE) @@ -37,4 +38,3 @@ par(op) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/HerringISS.Rd b/man/HerringISS.Rd index 5a0044b..30a9d53 100644 --- a/man/HerringISS.Rd +++ b/man/HerringISS.Rd @@ -25,6 +25,7 @@ Icelandic summer spawning Herring (\emph{Clupeaformis harengus}) stock, recruitm \item Recruitment } } + \examples{ data(HerringISS) str(HerringISS) @@ -39,4 +40,3 @@ par(op) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/HumpbackWFCR.Rd b/man/HumpbackWFCR.Rd index f3e85f2..c8450dd 100644 --- a/man/HumpbackWFCR.Rd +++ b/man/HumpbackWFCR.Rd @@ -28,6 +28,7 @@ Capture histories for Humpback Whitefish (\emph{Coregonus pidschian}) greater t \item Capture History } } + \examples{ data(HumpbackWFCR) str(HumpbackWFCR) @@ -38,4 +39,3 @@ head(HumpbackWFCR) Abundance 'Population Size' 'Mark-Recapture' 'Capture-Recapture' 'Petersen' 'Capture History' } \keyword{datasets} - diff --git a/man/InchLake1.rd b/man/InchLake1.rd index 175eb84..a7b9bcc 100644 --- a/man/InchLake1.rd +++ b/man/InchLake1.rd @@ -26,6 +26,7 @@ Total lengths of all fish captured in Inch Lake, WI in May, 2007 and May, 2008. \item Size Structure } } + \examples{ data(InchLake1) str(InchLake1) @@ -48,4 +49,3 @@ See \code{\link{InchLake2}} for a subsample that include weights. 'Length Frequency' 'Size Structure' PSD } \keyword{datasets} - diff --git a/man/InchLake2.rd b/man/InchLake2.rd index 0ff75bc..70800ea 100644 --- a/man/InchLake2.rd +++ b/man/InchLake2.rd @@ -27,6 +27,7 @@ Total lengths and weights for a subsample of fish captured in Inch Lake, WI in M \item Length Frequency } } + \examples{ data(InchLake2) str(InchLake2) @@ -46,4 +47,3 @@ See \code{\link{InchLake1}} for the entire sample, but without weights. 'Weight-Length' Condition 'Length Frequency' } \keyword{datasets} - diff --git a/man/JobfishSIO.Rd b/man/JobfishSIO.Rd index 50ed59a..44d9c19 100644 --- a/man/JobfishSIO.Rd +++ b/man/JobfishSIO.Rd @@ -26,6 +26,7 @@ Catch and effort data for Jobfish (\emph{Pristipomoides filamentosus}) from the \item Catchability } } + \examples{ data(JobfishSIO) str(JobfishSIO) @@ -36,4 +37,3 @@ head(JobfishSIO) Abundance 'Population Size' Leslie DeLury Depletion Catchability } \keyword{datasets} - diff --git a/man/JonesStockwell.Rd b/man/JonesStockwell.Rd index f20b646..7694917 100644 --- a/man/JonesStockwell.Rd +++ b/man/JonesStockwell.Rd @@ -31,6 +31,7 @@ Catches of Brown (\emph{Salmo trutta}) and Rainbow Trout (\emph{Oncorhynchus myk \item Removal } } + \examples{ data(JonesStockwell) str(JonesStockwell) @@ -44,4 +45,3 @@ JonesStockwell[3,] Abundance 'Population Size' Removal } \keyword{datasets} - diff --git a/man/Jonubi1.Rd b/man/Jonubi1.Rd index 380ebf1..fb6f2b2 100644 --- a/man/Jonubi1.Rd +++ b/man/Jonubi1.Rd @@ -22,6 +22,7 @@ Assigned ages and measured fork lengths for male Jonubi (\emph{Chalcalburnus mos \item von Bertalanffy } } + \examples{ data(Jonubi1) str(Jonubi1) @@ -36,4 +37,3 @@ plot(fl~age,data=Jonubi1) Growth 'von Bertalanffy' } \keyword{datasets} - diff --git a/man/Jonubi2.Rd b/man/Jonubi2.Rd index 12d1a6e..d5eead2 100644 --- a/man/Jonubi2.Rd +++ b/man/Jonubi2.Rd @@ -21,6 +21,7 @@ A total of 50 fish dispersed proportionately over 1-cm fork length intervals fro \item Age-Length Key } } + \examples{ data(Jonubi2) str(Jonubi2) @@ -35,4 +36,3 @@ plot(fl~age,data=Jonubi2) 'Age-Length Key' } \keyword{datasets} - diff --git a/man/KingCrabAK.Rd b/man/KingCrabAK.Rd index a152f7c..54d83a2 100644 --- a/man/KingCrabAK.Rd +++ b/man/KingCrabAK.Rd @@ -23,6 +23,7 @@ Stock and recruitment data for Red King Crab (\emph{Paralithodes camtschaticus}) \item Recruitment } } + \examples{ data(KingCrabAK) str(KingCrabAK) @@ -37,4 +38,3 @@ par(op) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/LJCisco.Rd b/man/LJCisco.Rd index 9255104..ab45059 100644 --- a/man/LJCisco.Rd +++ b/man/LJCisco.Rd @@ -23,6 +23,7 @@ Assigned age (by scales) and total length of Longjaw Cisco (\emph{Leucichthys al \item von Bertalanffy } } + \examples{ data(LJCisco) str(LJCisco) @@ -37,4 +38,3 @@ par(op) Growth 'von Bertalanffy' } \keyword{datasets} - diff --git a/man/LMBassBL.Rd b/man/LMBassBL.Rd index 9f7ee91..1240450 100644 --- a/man/LMBassBL.Rd +++ b/man/LMBassBL.Rd @@ -22,6 +22,7 @@ Length measurements of Largemouth Bass (\emph{Micropterus salmoides}) from Boome \item PSD } } + \examples{ data(LMBassBL) str(LMBassBL) @@ -33,4 +34,3 @@ hist(LMBassBL$tl,main="") 'Length Frequency' 'Size Structure' PSD } \keyword{datasets} - diff --git a/man/LMBassLCB.Rd b/man/LMBassLCB.Rd index fa56b56..2f67d1e 100644 --- a/man/LMBassLCB.Rd +++ b/man/LMBassLCB.Rd @@ -22,6 +22,7 @@ Lengthsfor Largemouth Bass (\emph{Micropterus salmoides}) from Lake Carl Blackwe \item PSD } } + \examples{ data(LMBassLCB) str(LMBassLCB) @@ -33,4 +34,3 @@ hist(LMBassLCB$tl,main="") 'Length Frequency' 'Size Structure' PSD } \keyword{datasets} - diff --git a/man/LakeTroutALTER.Rd b/man/LakeTroutALTER.Rd index a340ed3..09e8653 100644 --- a/man/LakeTroutALTER.Rd +++ b/man/LakeTroutALTER.Rd @@ -43,6 +43,7 @@ Lake trout were removed from Lake NE12 in the summers of 1986, 1988, and 1989 us \item Size Structure } } + \examples{ data(LakeTroutALTER) str(LakeTroutALTER) @@ -60,4 +61,3 @@ par(op) 'Length Frequency' 'Weight-Length' 'Growth' 'von Bertalanffy' 'Size Structure' 'Length Conversion' } \keyword{datasets} - diff --git a/man/LakeTroutEggs.Rd b/man/LakeTroutEggs.Rd index 10148f0..9d3983e 100644 --- a/man/LakeTroutEggs.Rd +++ b/man/LakeTroutEggs.Rd @@ -21,6 +21,7 @@ Length and egg deposition of Lake Superior Lake Trout (\emph{Salvelinus namaycus \item Other } } + \examples{ data(LakeTroutEggs) str(LakeTroutEggs) @@ -32,4 +33,3 @@ plot(eggs~tl,data=LakeTroutEggs) Other } \keyword{datasets} - diff --git a/man/LakeTroutGIS.Rd b/man/LakeTroutGIS.Rd index 0c03923..b49c5ef 100644 --- a/man/LakeTroutGIS.Rd +++ b/man/LakeTroutGIS.Rd @@ -23,6 +23,7 @@ Lake trout (\emph{Salvelinus namaycush}) stock and recruitment by year at Gull I \item Recruitment } } + \examples{ data(LakeTroutGIS) str(LakeTroutGIS) @@ -37,4 +38,3 @@ par(op) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/LakeTroutMI.Rd b/man/LakeTroutMI.Rd index af0b7b6..4605ebb 100644 --- a/man/LakeTroutMI.Rd +++ b/man/LakeTroutMI.Rd @@ -25,6 +25,7 @@ Stock and recruitment data for the 1971-1991 year-classes of Lake Trout (\emph{S \item Recruitment } } + \examples{ data(LakeTroutMI) LakeTroutMI$stock <- LakeTroutMI$wild+LakeTroutMI$stocked @@ -48,4 +49,3 @@ par(op) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/Lizardfish.Rd b/man/Lizardfish.Rd index 9b7ce48..4076c27 100644 --- a/man/Lizardfish.Rd +++ b/man/Lizardfish.Rd @@ -23,6 +23,7 @@ Greater Lizardfish (\emph{Saurida tumbil}) stock and recruitment by year, 1955-1 \item Recruitment } } + \examples{ data(Lizardfish) str(Lizardfish) @@ -37,4 +38,3 @@ par(op) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/LobsterHI.Rd b/man/LobsterHI.Rd index ad92de0..e5a0aa7 100644 --- a/man/LobsterHI.Rd +++ b/man/LobsterHI.Rd @@ -35,6 +35,7 @@ The vessel fished between 11 June and 14 July 1986 in the vicinity of Laysan Isl \item Catchability } } + \examples{ data(LobsterHI) str(LobsterHI) @@ -45,4 +46,3 @@ head(LobsterHI) Abundance 'Population Size' Leslie DeLury Depletion Catchability } \keyword{datasets} - diff --git a/man/LobsterPEI.Rd b/man/LobsterPEI.Rd index 454f07f..ac5fe64 100644 --- a/man/LobsterPEI.Rd +++ b/man/LobsterPEI.Rd @@ -30,6 +30,7 @@ Catch (1000s of pounds) and effort (1000s of traps) of Lobster from 33 days in 1 \item Catchability } } + \examples{ data(LobsterPEI) str(LobsterPEI) @@ -40,4 +41,3 @@ head(LobsterPEI) Abundance 'Population Size' Leslie DeLury Depletion Catchability } \keyword{datasets} - diff --git a/man/Menhaden1.Rd b/man/Menhaden1.Rd index d74b4c5..59773c9 100644 --- a/man/Menhaden1.Rd +++ b/man/Menhaden1.Rd @@ -25,6 +25,7 @@ Estimated catch-at-age for Gulf Menhaden (\emph{Brevoortia patronus}), 1964-2004 \item Catch curve } } + \examples{ data(Menhaden1) str(Menhaden1) @@ -41,4 +42,3 @@ Mortality 'Catch Curve' @source From Table 2 in Vaughan, D.S., K.W. Shertzer, and J.W. Smith. 2007. Gulf menhaden (\emph{Brevoortia patronus}) in the U.S. Gulf of Mexico: Fishery characteristics and biological reference points for management. Fisheries Research 83:263-275. [Was (is?) from http://menhaden.gsmfc.org/FishRes_Vaughan_etal_2007-GM.pdf.] } \keyword{datasets} - diff --git a/man/Morwong1.Rd b/man/Morwong1.Rd index 5bf7e89..ce24190 100644 --- a/man/Morwong1.Rd +++ b/man/Morwong1.Rd @@ -24,6 +24,7 @@ Ages assigned at two different times by Reader A to the otoliths of Jackass Morw \item Ageing Error } } + \examples{ data(Morwong1) str(Morwong1) @@ -36,4 +37,3 @@ xtabs(~first+second,data=Morwong1) Age Precision Bias 'Age Comparison' } \keyword{datasets} - diff --git a/man/Morwong2.Rd b/man/Morwong2.Rd index 01f7b5e..c7f71be 100644 --- a/man/Morwong2.Rd +++ b/man/Morwong2.Rd @@ -24,6 +24,7 @@ Ages assigned at two different times by Reader B to the otoliths of Jackass Morw \item Ageing Error } } + \examples{ data(Morwong2) str(Morwong2) @@ -36,4 +37,3 @@ xtabs(~first+second,data=Morwong2) Age Precision Bias 'Age Comparison' } \keyword{datasets} - diff --git a/man/Morwong3.Rd b/man/Morwong3.Rd index 98a0ffc..28577db 100644 --- a/man/Morwong3.Rd +++ b/man/Morwong3.Rd @@ -24,6 +24,7 @@ Ages assigned by two different readers to the otoliths of Jackass Morwong (\emph \item Ageing Error } } + \examples{ data(Morwong3) str(Morwong3) @@ -36,4 +37,3 @@ with(Morwong3,table(readerA,readerB)) Age Precision Bias 'Age Comparison' } \keyword{datasets} - diff --git a/man/Morwong4.Rd b/man/Morwong4.Rd index 93dbd01..cf610be 100644 --- a/man/Morwong4.Rd +++ b/man/Morwong4.Rd @@ -22,6 +22,7 @@ Assigned ages (from otoliths) and fork lengths of Jackass Morwong (\emph{Nemadac \item von Bertalanffy } } + \examples{ data(Morwong4) str(Morwong4) @@ -36,4 +37,3 @@ plot(fl~age,data=Morwong4) Growth 'von Bertalanffy' } \keyword{datasets} - diff --git a/man/Morwong4a.Rd b/man/Morwong4a.Rd index 026cd3d..8cdb5b8 100644 --- a/man/Morwong4a.Rd +++ b/man/Morwong4a.Rd @@ -18,6 +18,7 @@ A total of 104 fish dispersed proportionately over 1-cm fork length intervals fr \item Age-Length Key } } + \examples{ data(Morwong4a) str(Morwong4a) @@ -39,4 +40,3 @@ str(m4a.length) 'Age-Length Key' } \keyword{datasets} - diff --git a/man/Mosquitofish.Rd b/man/Mosquitofish.Rd index 2bcb83c..963e16b 100644 --- a/man/Mosquitofish.Rd +++ b/man/Mosquitofish.Rd @@ -30,6 +30,7 @@ Ages and lengths of Eastern Mosquitofish (\emph{Gambusia holbrooki}) from ten lo \item Somers model } } + \examples{ data(Mosquitofish) str(Mosquitofish) @@ -41,4 +42,3 @@ plot(sl~age2,data=Mosquitofish) 'Seasonal Growth' 'von Bertalanffy' Somers } \keyword{datasets} - diff --git a/man/MulletBS.Rd b/man/MulletBS.Rd index fc63b6b..ff74b4c 100644 --- a/man/MulletBS.Rd +++ b/man/MulletBS.Rd @@ -24,6 +24,7 @@ Ages assigned to whole and broken-burnt otoliths of Red Mullet (\emph{Mullus bar \item Ageing Error } } + \examples{ data(MulletBS) str(MulletBS) @@ -36,4 +37,3 @@ xtabs(~bb+whole,data=MulletBS) Age Precision Bias 'Age Comparison' } \keyword{datasets} - diff --git a/man/MuskieSLR.Rd b/man/MuskieSLR.Rd index 9b05348..02a6fa1 100644 --- a/man/MuskieSLR.Rd +++ b/man/MuskieSLR.Rd @@ -24,6 +24,7 @@ Ages of St. Lawrence River, ONT, Muskellunge (\emph{Esox masquinongy}) assessed \item Ageing Error } } + \examples{ data(MuskieSLR) str(MuskieSLR) @@ -36,4 +37,3 @@ xtabs(~ageC+ageS,data=MuskieSLR) Age Precision Bias 'Age Comparison' } \keyword{datasets} - diff --git a/man/MuskieWI06MR.rd b/man/MuskieWI06MR.rd index 566c162..490af6d 100644 --- a/man/MuskieWI06MR.rd +++ b/man/MuskieWI06MR.rd @@ -29,6 +29,7 @@ The number of Muskellunge (\emph{Esox masquinongy}) from a variety of lakes in W \item Petersen } } + \examples{ data(MuskieWI06MR) str(MuskieWI06MR) @@ -39,4 +40,3 @@ head(MuskieWI06MR) Abundance 'Population Size' 'Mark-Recapture' 'Capture-Recapture' 'Petersen' } \keyword{datasets} - diff --git a/man/PSalmonAK.Rd b/man/PSalmonAK.Rd index c293426..3c27419 100644 --- a/man/PSalmonAK.Rd +++ b/man/PSalmonAK.Rd @@ -25,6 +25,7 @@ Harvest, escapement, and return of northern Southeast Alaska Pink Salmon (\emph{ \item Recruitment } } + \examples{ data(PSalmonAK) str(PSalmonAK) @@ -39,4 +40,3 @@ par(op) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/Pallid.Rd b/man/Pallid.Rd index e018ebd..172c104 100644 --- a/man/Pallid.Rd +++ b/man/Pallid.Rd @@ -27,6 +27,7 @@ Lengths (standard, fork, and total) and weights for Pallid Sturgion (\emph{Scaph \item Length Conversion } } + \examples{ data(Pallid) str(Pallid) @@ -44,4 +45,3 @@ par(op) 'Weight-Length' 'Length Conversion' } \keyword{datasets} - diff --git a/man/Pathfinder.Rd b/man/Pathfinder.Rd index 9e4ecb6..545cf36 100644 --- a/man/Pathfinder.Rd +++ b/man/Pathfinder.Rd @@ -29,6 +29,7 @@ Catch and effort for three Snapper species (\emph{Pristipomoides zonatus}, \emph \item Catchability } } + \examples{ data(Pathfinder) str(Pathfinder) @@ -38,4 +39,3 @@ head(Pathfinder) Abundance 'Population Size' Leslie DeLury Depletion Catchability } \keyword{datasets} - diff --git a/man/PikeHL.Rd b/man/PikeHL.Rd index f6d94a4..3252d6e 100644 --- a/man/PikeHL.Rd +++ b/man/PikeHL.Rd @@ -30,6 +30,7 @@ Only Northern Pike >449 mm were considered here. \item Capture History } } + \examples{ data(PikeHL) str(PikeHL) @@ -40,4 +41,3 @@ head(PikeHL) Abundance 'Population Size' 'Mark-Recapture' 'Capture-Recapture' 'Petersen' 'Capture History' } \keyword{datasets} - diff --git a/man/PikeIL.Rd b/man/PikeIL.Rd index bfd8e53..e04e6fa 100644 --- a/man/PikeIL.Rd +++ b/man/PikeIL.Rd @@ -27,6 +27,7 @@ Catch and effort data for nine removal events of Northern Pike (\emph{Esox luciu \item Catchability } } + \examples{ data(PikeIL) str(PikeIL) @@ -37,4 +38,3 @@ head(PikeIL) Abundance 'Population Size' Leslie DeLury Depletion Catchability } \keyword{datasets} - diff --git a/man/PikeNYPartial2.Rd b/man/PikeNYPartial2.Rd index ab98427..38463eb 100644 --- a/man/PikeNYPartial2.Rd +++ b/man/PikeNYPartial2.Rd @@ -30,6 +30,7 @@ Each line consists of the date and unique fish identification number over four s \item Capture History } } + \examples{ data(PikeNYPartial2) str(PikeNYPartial2) @@ -40,4 +41,3 @@ head(PikeNYPartial2) Abundance 'Population Size' 'Mark-Recapture' 'Capture-Recapture' 'Schnabel' 'Capture History' } \keyword{datasets} - diff --git a/man/PikeWindermere.Rd b/man/PikeWindermere.Rd index f69e891..2ca026a 100644 --- a/man/PikeWindermere.Rd +++ b/man/PikeWindermere.Rd @@ -28,6 +28,7 @@ Stock values were originally reported in 1000s of kgs and recruits were original \item Recruitment } } + \examples{ data(PikeWindermere) str(PikeWindermere) @@ -45,4 +46,3 @@ par(op) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/PygmyWFBC.Rd b/man/PygmyWFBC.Rd index 8988a57..abdd264 100644 --- a/man/PygmyWFBC.Rd +++ b/man/PygmyWFBC.Rd @@ -35,6 +35,7 @@ Biological information for Pygmy Whitefish (\emph{Prosopium coulterii}) from Din \item Length Frequency } } + \examples{ data(PygmyWFBC) str(PygmyWFBC) @@ -45,4 +46,3 @@ head(PygmyWFBC) 'Weight-Length' 'Age Comparison' Condition 'Length Frequency' } \keyword{datasets} - diff --git a/man/RBSmeltErie.Rd b/man/RBSmeltErie.Rd index 2981fe3..53bfa72 100644 --- a/man/RBSmeltErie.Rd +++ b/man/RBSmeltErie.Rd @@ -25,6 +25,7 @@ Zeros were changed to 0.1 in 1984, 1987, 1991, and 1994. \item Recruitment time-series } } + \examples{ data(RBSmeltErie) str(RBSmeltErie) @@ -36,4 +37,3 @@ plot(recruits~year,data=RBSmeltErie,type="l") Recruitment } \keyword{datasets} - diff --git a/man/RBSmeltLM.Rd b/man/RBSmeltLM.Rd index b7534e9..935c5a1 100644 --- a/man/RBSmeltLM.Rd +++ b/man/RBSmeltLM.Rd @@ -21,6 +21,7 @@ Rainbow Smelt (\emph{Osmerus mordax}) fork lengths from near Grand Haven, Lake M \item Size Structure } } + \examples{ data(RBSmeltLM) str(RBSmeltLM) @@ -32,4 +33,3 @@ hist(RBSmeltLM$fl,main="") 'Length Frequency' 'Size Structure' } \keyword{datasets} - diff --git a/man/RBTroutKenai.Rd b/man/RBTroutKenai.Rd index 3819051..460e92b 100644 --- a/man/RBTroutKenai.Rd +++ b/man/RBTroutKenai.Rd @@ -24,6 +24,7 @@ Length-at-marking and recapture and time-at-large for Rainbow Trout (\emph{Oncor \item Fabens method } } + \examples{ data(RBTroutKenai) str(RBTroutKenai) @@ -35,4 +36,3 @@ plot((Lr-Lm)~dt,data=RBTroutKenai) Growth 'von Bertalanffy' Fabens } \keyword{datasets} - diff --git a/man/RBTroutUNSP.Rd b/man/RBTroutUNSP.Rd index 8f6b4a7..e938513 100644 --- a/man/RBTroutUNSP.Rd +++ b/man/RBTroutUNSP.Rd @@ -26,6 +26,7 @@ Capture histories for Rainbow Trout (\emph{Oncorhynchus mykiss}) in Upper Niagar \item Capture History } } + \examples{ data(RBTroutUNSP) str(RBTroutUNSP) @@ -36,4 +37,3 @@ head(RBTroutUNSP) Abundance 'Population Size' 'Mark-Recapture' 'Capture-Recapture' 'Petersen' 'Capture History' } \keyword{datasets} - diff --git a/man/RWhitefishAI.Rd b/man/RWhitefishAI.Rd index ef03890..77326f5 100644 --- a/man/RWhitefishAI.Rd +++ b/man/RWhitefishAI.Rd @@ -22,6 +22,7 @@ Ages and total lengths of Round Whitefish (\emph{Prosopium cylindraceum}) collec \item von Bertalanffy } } + \examples{ data(RWhitefishAI) str(RWhitefishAI) @@ -33,4 +34,3 @@ plot(tl~age,data=RWhitefishAI) Growth 'von Bertalanffy' } \keyword{datasets} - diff --git a/man/RWhitefishIR.Rd b/man/RWhitefishIR.Rd index 94e2aab..1d92cd0 100644 --- a/man/RWhitefishIR.Rd +++ b/man/RWhitefishIR.Rd @@ -22,6 +22,7 @@ Ages and total lengths of Round Whitefish (\emph{Prosopium cylindraceum}) collec \item von Bertalanffy } } + \examples{ data(RWhitefishIR) str(RWhitefishIR) @@ -33,4 +34,3 @@ plot(tl~age,data=RWhitefishIR) Growth 'von Bertalanffy' } \keyword{datasets} - diff --git a/man/RedDrum.Rd b/man/RedDrum.Rd index 59a176e..c62c027 100644 --- a/man/RedDrum.Rd +++ b/man/RedDrum.Rd @@ -22,6 +22,7 @@ Assigned ages (from otoliths) and fork lengths of Red Drum (\emph{Sciaenops ocel \item von Bertalanffy } } + \examples{ data(RedDrum) str(RedDrum) @@ -33,4 +34,3 @@ plot(fl~age,data=RedDrum) Growth 'von Bertalanffy' } \keyword{datasets} - diff --git a/man/Riffleshell.Rd b/man/Riffleshell.Rd index e1c62e8..72ac883 100644 --- a/man/Riffleshell.Rd +++ b/man/Riffleshell.Rd @@ -31,6 +31,7 @@ The number of mussels caught in multiple samples of Tan Riffleshell (\emph{Epiob \item Schumacher-Eschmeyer } } + \examples{ data(Riffleshell) str(Riffleshell) @@ -41,4 +42,3 @@ head(Riffleshell) Abundance 'Population Size' 'Mark-Recapture' 'Capture-Recapture' 'Schnabel' } \keyword{datasets} - diff --git a/man/RockBassCL.Rd b/man/RockBassCL.Rd index 18355dc..18447de 100644 --- a/man/RockBassCL.Rd +++ b/man/RockBassCL.Rd @@ -22,6 +22,7 @@ Catch-at-age for Cayuga Lake Rock Bass (\emph{Amploplites rupestris}) from a sin \item Catch curve } } + \examples{ data(RockBassCL) str(RockBassCL) @@ -33,4 +34,3 @@ plot(log(catch)~age,data=RockBassCL) Mortality 'Catch Curve' } \keyword{datasets} - diff --git a/man/RockBassLO1.Rd b/man/RockBassLO1.Rd index 6afb79e..28968f2 100644 --- a/man/RockBassLO1.Rd +++ b/man/RockBassLO1.Rd @@ -22,6 +22,7 @@ Assigned ages (from scales) and measured total lengths for each of 1288 Rock Bas \item von Bertalanffy } } + \examples{ data(RockBassLO1) str(RockBassLO1) @@ -36,4 +37,3 @@ plot(tl~age,data=RockBassLO1) Growth 'von Bertalanffy' } \keyword{datasets} - diff --git a/man/RockBassLO2.Rd b/man/RockBassLO2.Rd index c56a097..7cc1d09 100644 --- a/man/RockBassLO2.Rd +++ b/man/RockBassLO2.Rd @@ -21,6 +21,7 @@ As many as 10 fish per 10-mm total length intervals from the \code{\link{RockBas \item Age-Length Key } } + \examples{ data(RockBassLO2) str(RockBassLO2) @@ -40,4 +41,3 @@ rb.length <- subset(RockBassLO2,is.na(age)) 'Age-Length Key' } \keyword{datasets} - diff --git a/man/RuffeSLRH92.Rd b/man/RuffeSLRH92.Rd index 695e11c..be181f9 100644 --- a/man/RuffeSLRH92.Rd +++ b/man/RuffeSLRH92.Rd @@ -35,6 +35,7 @@ Biological data for Ruffe (\emph{Gymnocephalus cernuus}) captured in the St. Lou \item Maturity } } + \examples{ data(RuffeSLRH92) str(RuffeSLRH92) @@ -58,4 +59,3 @@ xtabs(~maturity+month+sex,data=RuffeSLRH92) Growth 'von Bertalanffy' 'Length Frequency' 'Weight-Length' Maturity } \keyword{datasets} - diff --git a/man/RuffeTL89.Rd b/man/RuffeTL89.Rd index ac36a04..a90b036 100644 --- a/man/RuffeTL89.Rd +++ b/man/RuffeTL89.Rd @@ -21,6 +21,7 @@ Total length for Ruffe (\emph{Gymnocephalus cernuus}) captured in July, 1989 (cy \item Size Structure } } + \examples{ data(RuffeTL89) str(RuffeTL89) @@ -32,4 +33,3 @@ hist(RuffeTL89$tl,main="") 'Length Frequency' 'Size Structure' } \keyword{datasets} - diff --git a/man/SLampreyGL.Rd b/man/SLampreyGL.Rd index 33921a1..d33e62c 100644 --- a/man/SLampreyGL.Rd +++ b/man/SLampreyGL.Rd @@ -22,6 +22,7 @@ Stock and recruitment data for Sea Lamprey (\emph{Petromyzon marinus}) in the Gr \item Recruitment } } + \examples{ data(SLampreyGL) str(SLampreyGL) @@ -33,4 +34,3 @@ plot(recruits~stock,data=SLampreyGL) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/SalmonADP.Rd b/man/SalmonADP.Rd index e0b8cb5..a5b2e52 100644 --- a/man/SalmonADP.Rd +++ b/man/SalmonADP.Rd @@ -23,6 +23,7 @@ Catches in removal events of salmon parr from the Afon Dulas at Pentre, 19Jun79. \item Removal } } + \examples{ data(SalmonADP) str(SalmonADP) @@ -36,4 +37,3 @@ SalmonADP Abundance 'Population Size' Removal } \keyword{datasets} - diff --git a/man/SalmonidsMCCA.Rd b/man/SalmonidsMCCA.Rd index 12a3f68..95aef0a 100644 --- a/man/SalmonidsMCCA.Rd +++ b/man/SalmonidsMCCA.Rd @@ -29,6 +29,7 @@ Sampling was conducted using a Smith Root model 15-D POW electrofisher. Block ne \item Removal } } + \examples{ data(SalmonidsMCCA) str(SalmonidsMCCA) @@ -42,4 +43,3 @@ SalmonidsMCCA[3,] Abundance 'Population Size' Removal } \keyword{datasets} - diff --git a/man/SardineChile.rd b/man/SardineChile.rd index 109f538..33bc226 100644 --- a/man/SardineChile.rd +++ b/man/SardineChile.rd @@ -29,6 +29,7 @@ Ages (in months) and total lengths of two year-classes of Sardine \item Somers model } } + \examples{ data(SardineChile) str(SardineChile) @@ -41,4 +42,3 @@ plot(tl.cm~age,data=SardineChile) Growth 'von Bertalanffy' Somers 'Seasonal Growth' } \keyword{datasets} - diff --git a/man/SardineLK.Rd b/man/SardineLK.Rd index 4c549dd..0944027 100644 --- a/man/SardineLK.Rd +++ b/man/SardineLK.Rd @@ -22,6 +22,7 @@ Ages (days) and total lengths of larval Lake Tanganyika Sardine (\emph{Limnothri \item von Bertalanffy } } + \examples{ data(SardineLK) str(SardineLK) @@ -33,4 +34,3 @@ plot(tl~days,data=SardineLK) Growth 'von Bertalanffy' } \keyword{datasets} - diff --git a/man/SardinesPacific.Rd b/man/SardinesPacific.Rd index f296a30..37781f3 100644 --- a/man/SardinesPacific.Rd +++ b/man/SardinesPacific.Rd @@ -23,6 +23,7 @@ Pacific Sardine (\emph{Sardinops sagax}) stock and recruitment by year, 1935-199 \item Recruitment } } + \examples{ data(SardinesPacific) str(SardinesPacific) @@ -37,4 +38,3 @@ par(op) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/SculpinALTER.Rd b/man/SculpinALTER.Rd index 4a1c8bb..9d1daee 100644 --- a/man/SculpinALTER.Rd +++ b/man/SculpinALTER.Rd @@ -29,6 +29,7 @@ Slimy Sculpin were captured from Lake S-6 during the summers of 1988 and 1989. \item Size Structure } } + \examples{ data(SculpinALTER) str(SculpinALTER) @@ -45,4 +46,3 @@ par(op) Growth 'von Bertalanffy' 'Length Frequency' 'Weight-Length' 'Size Structure' } \keyword{datasets} - diff --git a/man/ShadCR.Rd b/man/ShadCR.Rd index 59b73d3..6f9eecf 100644 --- a/man/ShadCR.Rd +++ b/man/ShadCR.Rd @@ -35,6 +35,7 @@ Used in the \href{http://derekogle.com/IFAR/}{Introductory Fisheries Analyses wi \item Ageing Error } } + \examples{ data(ShadCR) str(ShadCR) @@ -50,4 +51,3 @@ par(op) Age Precision Bias 'Age Comparison' } \keyword{datasets} - diff --git a/man/ShrimpGuam.Rd b/man/ShrimpGuam.Rd index 5099535..109ee7d 100644 --- a/man/ShrimpGuam.Rd +++ b/man/ShrimpGuam.Rd @@ -33,6 +33,7 @@ The original authors estiamted populations size using the Leslie method with the \item Catchability } } + \examples{ data(ShrimpGuam) str(ShrimpGuam) @@ -51,4 +52,3 @@ ShrimpGuam$cumCatch <- cumsum(ShrimpGuam$total)-ShrimpGuam$total/2 Abundance 'Population Size' Leslie DeLury Depletion Catchability } \keyword{datasets} - diff --git a/man/SimonsonLyons.Rd b/man/SimonsonLyons.Rd index 58cbd9c..a82890a 100644 --- a/man/SimonsonLyons.Rd +++ b/man/SimonsonLyons.Rd @@ -29,6 +29,7 @@ Catches of various species in consecutive removal events at various locations. \item Removal } } + \examples{ data(SimonsonLyons) str(SimonsonLyons) @@ -42,4 +43,3 @@ SimonsonLyons[3,] Abundance 'Population Size' Removal } \keyword{datasets} - diff --git a/man/SiscowetMI2004.Rd b/man/SiscowetMI2004.Rd index fac6119..2ef2187 100644 --- a/man/SiscowetMI2004.Rd +++ b/man/SiscowetMI2004.Rd @@ -31,6 +31,7 @@ Used in the \href{http://derekogle.com/IFAR/}{Introductory Fisheries Analyses wi \item Growth } } + \examples{ data(SiscowetMI2004) str(SiscowetMI2004) @@ -47,4 +48,3 @@ par(op) 'Age-Length Key' 'Growth' } \keyword{datasets} - diff --git a/man/Snapper.Rd b/man/Snapper.Rd index c2788c0..3d507e9 100644 --- a/man/Snapper.Rd +++ b/man/Snapper.Rd @@ -21,6 +21,7 @@ Lengths of Australian Snapper (\emph{Chrysophrys auratus}) taken by trawl. \item Size Structure } } + \examples{ data(Snapper) str(Snapper) @@ -32,4 +33,3 @@ hist(Snapper$len,main="") 'Length Frequency' 'Size Structure' } \keyword{datasets} - diff --git a/man/SnapperHG1.Rd b/man/SnapperHG1.Rd index b208dde..27fc5bb 100644 --- a/man/SnapperHG1.Rd +++ b/man/SnapperHG1.Rd @@ -25,6 +25,7 @@ the unaged fish were simulated from Table 5 assuming that the total number of fi \item Age-Length Key } } + \examples{ data(SnapperHG1) str(SnapperHG1) @@ -46,4 +47,3 @@ str(sn1.length) 'Age-Length Key' } \keyword{datasets} - diff --git a/man/SnapperHG2.Rd b/man/SnapperHG2.Rd index b378cf8..269ba98 100644 --- a/man/SnapperHG2.Rd +++ b/man/SnapperHG2.Rd @@ -21,6 +21,7 @@ A large sample (approximately fixed sample size per length interval) of Snapper \item Age-Length Key } } + \examples{ data(SnapperHG2) str(SnapperHG2) @@ -42,4 +43,3 @@ See the same data in summarized format as \code{alkdata} in \pkg{fishmethods}. 'Age-Length Key' } \keyword{datasets} - diff --git a/man/SockeyeKL.Rd b/man/SockeyeKL.Rd index 3912a18..13e9bf9 100644 --- a/man/SockeyeKL.Rd +++ b/man/SockeyeKL.Rd @@ -23,6 +23,7 @@ Sockeye Salmon (\emph{Oncorhynchus nerka}) stock and recruitment in Karluk Lake, \item Recruitment } } + \examples{ data(SockeyeKL) str(SockeyeKL) @@ -37,4 +38,3 @@ par(op) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/SockeyeSR.Rd b/man/SockeyeSR.Rd index 409e72c..9ca0fb7 100644 --- a/man/SockeyeSR.Rd +++ b/man/SockeyeSR.Rd @@ -26,6 +26,7 @@ The dataset is usually analysed without case 12 because a rockslide occurred tha \item Recruitment } } + \examples{ data(SockeyeSR) str(SockeyeSR) @@ -41,4 +42,3 @@ par(op) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/SpotVA2.Rd b/man/SpotVA2.Rd index 37315e5..1ae9791 100644 --- a/man/SpotVA2.Rd +++ b/man/SpotVA2.Rd @@ -21,6 +21,7 @@ As many as 10 fish per 1-inch total length intervals from the \code{\link[FSA]{S \item Age-Length Key } } + \examples{ data(SpotVA2) str(SpotVA2) @@ -42,4 +43,3 @@ str(spot.length) 'Age-Length Key' } \keyword{datasets} - diff --git a/man/SpottedSucker1.Rd b/man/SpottedSucker1.Rd index b30296c..85c2ba6 100644 --- a/man/SpottedSucker1.Rd +++ b/man/SpottedSucker1.Rd @@ -22,6 +22,7 @@ Ages and total lengths of Spotted Sucker (\emph{Minytrema melanops}) collected f \item von Bertalanffy } } + \examples{ data(SpottedSucker1) str(SpottedSucker1) @@ -33,4 +34,3 @@ plot(tl~age,data=SpottedSucker1) Growth 'von Bertalanffy' } \keyword{datasets} - diff --git a/man/StripedBass1.Rd b/man/StripedBass1.Rd index b79ad43..f1171eb 100644 --- a/man/StripedBass1.Rd +++ b/man/StripedBass1.Rd @@ -24,6 +24,7 @@ Ages of Striped Bass (\emph{Morone saxatilis}) assessed from heat-pressed scales \item Ageing Error } } + \examples{ data(StripedBass1) str(StripedBass1) @@ -36,4 +37,3 @@ xtabs(~ageO+ageS,data=StripedBass1) Age Precision Bias } \keyword{datasets} - diff --git a/man/StripedBass2.Rd b/man/StripedBass2.Rd index 52c2971..4680e5c 100644 --- a/man/StripedBass2.Rd +++ b/man/StripedBass2.Rd @@ -22,6 +22,7 @@ Assigned ages (from otoliths) and measured total lengths for each of 1201 Stripe \item von Bertalanffy } } + \examples{ data(StripedBass2) str(StripedBass2) @@ -36,4 +37,3 @@ plot(tl~age,data=StripedBass2) Growth 'von Bertalanffy' } \keyword{datasets} - diff --git a/man/StripedBass3.Rd b/man/StripedBass3.Rd index c6757e1..cc85afc 100644 --- a/man/StripedBass3.Rd +++ b/man/StripedBass3.Rd @@ -18,6 +18,7 @@ As many as 10 fish per 1-inch total length intervals from the \code{StripedBass2 \item Age-Length Key } } + \examples{ data(StripedBass3) str(StripedBass3) @@ -39,4 +40,3 @@ str(sb.length) 'Age-Length Key' } \keyword{datasets} - diff --git a/man/StripedBass4.Rd b/man/StripedBass4.Rd index 181745e..bba6cb2 100644 --- a/man/StripedBass4.Rd +++ b/man/StripedBass4.Rd @@ -24,6 +24,7 @@ Ages assigned by two different readers to the scales of Striped Bass (\emph{Moro \item Ageing Error } } + \examples{ data(StripedBass4) str(StripedBass4) @@ -39,4 +40,3 @@ xtabs(~reader1+reader2,data=StripedBass4) Age Precision Bias 'Age Comparison' } \keyword{datasets} - diff --git a/man/StripedBass5.Rd b/man/StripedBass5.Rd index 4b06149..0b54d52 100644 --- a/man/StripedBass5.Rd +++ b/man/StripedBass5.Rd @@ -24,6 +24,7 @@ Ages assigned by two different readers to the otoliths of Striped Bass (\emph{Mo \item Ageing Error } } + \examples{ data(StripedBass5) str(StripedBass5) @@ -39,4 +40,3 @@ xtabs(~reader1+reader2,data=StripedBass5) Age Precision Bias 'Age Comparison' } \keyword{datasets} - diff --git a/man/StripedBass6.Rd b/man/StripedBass6.Rd index ccb43f1..ba275cb 100644 --- a/man/StripedBass6.Rd +++ b/man/StripedBass6.Rd @@ -24,6 +24,7 @@ Ages assigned to the scales and otoliths of Striped Bass (\emph{Morone saxatilis \item Ageing Error } } + \examples{ data(StripedBass6) str(StripedBass6) @@ -39,4 +40,3 @@ xtabs(~otolith+scale,data=StripedBass6) Age Precision Bias 'Age Comparison' } \keyword{datasets} - diff --git a/man/SturgeonBL.Rd b/man/SturgeonBL.Rd index 9b7a416..20948ed 100644 --- a/man/SturgeonBL.Rd +++ b/man/SturgeonBL.Rd @@ -28,6 +28,7 @@ The number of Lake Sturgeon (\emph{Acipenser fulvescens}) caught in multiple sam \item Schumacher-Eschmeyer } } + \examples{ data(SturgeonBL) str(SturgeonBL) @@ -38,4 +39,3 @@ head(SturgeonBL) Abundance 'Population Size' 'Mark-Recapture' 'Capture-Recapture' Schnabel } \keyword{datasets} - diff --git a/man/SturgeonGB.Rd b/man/SturgeonGB.Rd index 01a1a53..03a4050 100644 --- a/man/SturgeonGB.Rd +++ b/man/SturgeonGB.Rd @@ -24,6 +24,7 @@ Used in the \href{http://derekogle.com/IFAR/}{Introductory Fisheries Analyses wi \item Year-class Strength } } + \examples{ data(SturgeonGB) str(SturgeonGB) @@ -35,4 +36,3 @@ plot(age~year,data=SturgeonGB) 'Year-class Strength' } \keyword{datasets} - diff --git a/man/SunfishIN.Rd b/man/SunfishIN.Rd index 8504e05..bada126 100644 --- a/man/SunfishIN.Rd +++ b/man/SunfishIN.Rd @@ -38,6 +38,7 @@ The number of Redear Sunfish (\emph{Lepomis microlophus}) caught in multiple sam \item Schumacher-Eschmeyer } } + \examples{ data(SunfishIN) str(SunfishIN) @@ -47,4 +48,3 @@ SunfishIN Abundance 'Population Size' 'Mark-Recapture' 'Capture-Recapture' Schnabel } \keyword{datasets} - diff --git a/man/SunfishLP.Rd b/man/SunfishLP.Rd index 80a5cd1..31aa694 100644 --- a/man/SunfishLP.Rd +++ b/man/SunfishLP.Rd @@ -22,6 +22,7 @@ The percent frequency of of Bluegill (\emph{Lepomis macrochirus}) and Redear Sun \item Catch curve } } + \examples{ data(SunfishLP) str(SunfishLP) @@ -33,4 +34,3 @@ plot(log(perc.freq)~age,data=SunfishLP) Mortality 'Catch Curve' } \keyword{datasets} - diff --git a/man/TPrawnsEG.rd b/man/TPrawnsEG.rd index 90be1b3..4d946b9 100644 --- a/man/TPrawnsEG.rd +++ b/man/TPrawnsEG.rd @@ -25,6 +25,7 @@ Stock and recruitment data for Exmouth Gulf Tiger Prawn (\emph{Panaeus esculentu \item Recruitment } } + \examples{ data(TPrawnsEG) str(TPrawnsEG) @@ -40,4 +41,3 @@ par(op) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/TroutADP.Rd b/man/TroutADP.Rd index dd0b12e..ca6aaec 100644 --- a/man/TroutADP.Rd +++ b/man/TroutADP.Rd @@ -23,6 +23,7 @@ Catches of trout on five successive removal events from the Afon Dulas at Pentre \item Removal } } + \examples{ data(TroutADP) str(TroutADP) @@ -36,4 +37,3 @@ TroutADP Abundance 'Population Size' Removal } \keyword{datasets} - diff --git a/man/TroutBR.Rd b/man/TroutBR.Rd index 6f7650e..bc23f95 100644 --- a/man/TroutBR.Rd +++ b/man/TroutBR.Rd @@ -23,6 +23,7 @@ Total lengths (inches) and ages (from scales) of Brown Trout (\emph{Salmo trutta \item von Bertalanffy } } + \examples{ data(TroutBR) str(TroutBR) @@ -37,4 +38,3 @@ par(op) Growth 'von Bertalanffy' } \keyword{datasets} - diff --git a/man/TroutperchLM1.Rd b/man/TroutperchLM1.Rd index 7578839..01425f5 100644 --- a/man/TroutperchLM1.Rd +++ b/man/TroutperchLM1.Rd @@ -23,6 +23,7 @@ The assigned ages (by scales), total lengths (mm), and sexes of Troutperch (\emp \item von Bertalanffy } } + \examples{ data(TroutperchLM1) str(TroutperchLM1) @@ -37,4 +38,3 @@ par(op) Growth 'von Bertalanffy' } \keyword{datasets} - diff --git a/man/TroutperchLM2.Rd b/man/TroutperchLM2.Rd index 9af8849..c3b2ecc 100644 --- a/man/TroutperchLM2.Rd +++ b/man/TroutperchLM2.Rd @@ -21,6 +21,7 @@ Troutperch (\emph{Percopsis omiscomaycus}) fork lengths from near Grand Haven, L \item Size Structure } } + \examples{ data(TroutperchLM2) str(TroutperchLM2) @@ -32,4 +33,3 @@ hist(TroutperchLM2$fl,main="") 'Length Frequency' 'Size Structure' } \keyword{datasets} - diff --git a/man/TroutperchLM3.Rd b/man/TroutperchLM3.Rd index 748e868..acd276f 100644 --- a/man/TroutperchLM3.Rd +++ b/man/TroutperchLM3.Rd @@ -22,6 +22,7 @@ A random subsample of the lengths in the \code{\link{TroutperchLM2}} data frame. \item Size Structure } } + \examples{ data(TroutperchLM3) str(TroutperchLM3) @@ -35,4 +36,3 @@ head(TroutperchLM3) 'Length Frequency' 'Size Structure' 'Length Expansion' } \keyword{datasets} - diff --git a/man/VendaceLP.Rd b/man/VendaceLP.Rd index f0c5349..687ef95 100644 --- a/man/VendaceLP.Rd +++ b/man/VendaceLP.Rd @@ -23,6 +23,7 @@ Vendace (\emph{Coregonus albula}) recruitment by year in Lake Puulavesi, 1982-19 \item Recruitment } } + \examples{ data(VendaceLP) str(VendaceLP) @@ -37,4 +38,3 @@ par(op) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/VendaceLP2.Rd b/man/VendaceLP2.Rd index 31f7b42..1f6018c 100644 --- a/man/VendaceLP2.Rd +++ b/man/VendaceLP2.Rd @@ -25,6 +25,7 @@ Original authors fit an exponential curve to the fecundity-recruits relationship \item Recruitment } } + \examples{ data(VendaceLP2) str(VendaceLP2) @@ -36,4 +37,3 @@ plot(recruits~fecundity,data=VendaceLP2) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/WShrimpGA.Rd b/man/WShrimpGA.Rd index ee25ee0..5f6fc44 100644 --- a/man/WShrimpGA.Rd +++ b/man/WShrimpGA.Rd @@ -27,6 +27,7 @@ No graph was shown for stock values vs. year so some stock values had to be haph \item Recruitment } } + \examples{ data(WShrimpGA) str(WShrimpGA) @@ -41,4 +42,3 @@ par(op) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/WalleyeConsumption.Rd b/man/WalleyeConsumption.Rd index 2aba915..051927a 100644 --- a/man/WalleyeConsumption.Rd +++ b/man/WalleyeConsumption.Rd @@ -21,6 +21,7 @@ Consumption of prey by Walleye (\emph{Sander vitreus}) at different prey densiti \item Nonlinear modeling } } + \examples{ data(WalleyeConsumption) str(WalleyeConsumption) @@ -29,4 +30,3 @@ plot(FoodConsump~PreyDensity,data=WalleyeConsumption,pch=16) } \keyword{datasets} - diff --git a/man/WalleyeEL.Rd b/man/WalleyeEL.Rd index 4393308..b267c44 100644 --- a/man/WalleyeEL.Rd +++ b/man/WalleyeEL.Rd @@ -25,6 +25,7 @@ Abundance of age-0 and age-5 and older Walleye (\emph{Sander vitreus}), abundanc \item Recruitment } } + \examples{ data(WalleyeEL) str(WalleyeEL) @@ -39,4 +40,3 @@ par(op) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/WalleyeErie.Rd b/man/WalleyeErie.Rd index e41568b..bb4251f 100644 --- a/man/WalleyeErie.Rd +++ b/man/WalleyeErie.Rd @@ -20,6 +20,7 @@ Walleye (\emph{Sander vitreus}) recruitment time-series for Lake Erie, 1959-1972 \item Recruitment time-series } } + \examples{ data(WalleyeErie) str(WalleyeErie) @@ -31,4 +32,3 @@ plot(recruits~year,data=WalleyeErie,type="l") Recruitment } \keyword{datasets} - diff --git a/man/WalleyeErie2.Rd b/man/WalleyeErie2.Rd index e29ff31..eddb21d 100644 --- a/man/WalleyeErie2.Rd +++ b/man/WalleyeErie2.Rd @@ -35,6 +35,7 @@ Walleye (\emph{Sander vitreus}) biological data (length, weight, sex, maturity, \item Condition } } + \examples{ data(WalleyeErie2) str(WalleyeErie2) @@ -46,4 +47,3 @@ xtabs(~year+loc+sex,data=WalleyeErie2) 'Growth' 'Weight-Length' 'Catch curve' 'Mortality' 'Maturity' 'Size Structure' 'Condition' 'Length Frequency' } \keyword{datasets} - diff --git a/man/WalleyeKS.Rd b/man/WalleyeKS.Rd index a75f2f9..3e99b5f 100644 --- a/man/WalleyeKS.Rd +++ b/man/WalleyeKS.Rd @@ -26,6 +26,7 @@ The authors used all age-2 and older Walleye to construct the catch curves. \item Catch curve } } + \examples{ data(WalleyeKS) str(WalleyeKS) @@ -46,4 +47,3 @@ par(op) Mortality 'Catch Curve' } \keyword{datasets} - diff --git a/man/WalleyeML.Rd b/man/WalleyeML.Rd index 5dcaea1..c54423a 100644 --- a/man/WalleyeML.Rd +++ b/man/WalleyeML.Rd @@ -29,6 +29,7 @@ Back-calculated lengths-at-age for Walleye (\emph{Sander vitreus}) from Lake Mi \item Back-calculation } } + \examples{ data(WalleyeML) str(WalleyeML) @@ -40,4 +41,3 @@ xtabs(~Year+Est.Age+Sex,data=WalleyeML) 'Growth' 'von Bertalanffy' 'Back-calculation' } \keyword{datasets} - diff --git a/man/WalleyeMN06a.Rd b/man/WalleyeMN06a.Rd index cdf2297..1be9b7c 100644 --- a/man/WalleyeMN06a.Rd +++ b/man/WalleyeMN06a.Rd @@ -23,6 +23,7 @@ Catch-at-age for Walleye (\emph{Sander vitreus}) collected from four lakes in No \item Catch curve } } + \examples{ data(WalleyeMN06a) str(WalleyeMN06a) @@ -39,4 +40,3 @@ par(op) Mortality 'Catch Curve' } \keyword{datasets} - diff --git a/man/WalleyeMN06b.Rd b/man/WalleyeMN06b.Rd index 67e0116..b22c70a 100644 --- a/man/WalleyeMN06b.Rd +++ b/man/WalleyeMN06b.Rd @@ -29,6 +29,7 @@ Summary results of capture histories (number captured, number of recaptured fish \item Schumacher-Eschmeyer } } + \examples{ data(WalleyeMN06b) str(WalleyeMN06b) @@ -39,4 +40,3 @@ head(WalleyeMN06b) Abundance 'Population Size' 'Mark-Recapture' 'Capture-Recapture' 'Schnabel' } \keyword{datasets} - diff --git a/man/WalleyePL.Rd b/man/WalleyePL.Rd index 04609bc..5a185c4 100644 --- a/man/WalleyePL.Rd +++ b/man/WalleyePL.Rd @@ -29,6 +29,7 @@ The numbers of young-of-year walleye (\emph{Sander vitreus}) that were captured, \item Schumacher-Eschmeyer } } + \examples{ data(WalleyePL) str(WalleyePL) @@ -40,4 +41,3 @@ subset(WalleyePL,year==1960) Abundance 'Population Size' 'Mark-Recapture' 'Capture-Recapture' 'Schnabel' } \keyword{datasets} - diff --git a/man/WalleyePS.Rd b/man/WalleyePS.Rd index e3b6414..519adc3 100644 --- a/man/WalleyePS.Rd +++ b/man/WalleyePS.Rd @@ -29,6 +29,7 @@ Relationships between otoliths and spines and otoliths and scales are exact acco \item Ageing Error } } + \examples{ data(WalleyePS) str(WalleyePS) @@ -47,4 +48,3 @@ par(op) Age Precision Bias 'Age Comparison' } \keyword{datasets} - diff --git a/man/WalleyeRL.Rd b/man/WalleyeRL.Rd index 8bd5562..0ab35ff 100644 --- a/man/WalleyeRL.Rd +++ b/man/WalleyeRL.Rd @@ -36,6 +36,7 @@ Data is in one-fish-per-line format. \item Weisberg linear growth model } } + \examples{ data(WalleyeRL) str(WalleyeRL) @@ -46,4 +47,3 @@ head(WalleyeRL) Growth Weisberg LGM } \keyword{datasets} - diff --git a/man/WalleyeWad.Rd b/man/WalleyeWad.Rd index 1d780ed..f1a202e 100644 --- a/man/WalleyeWad.Rd +++ b/man/WalleyeWad.Rd @@ -29,6 +29,7 @@ Used in the \href{http://derekogle.com/IFAR/}{Introductory Fisheries Analyses wi \item Catch Curve } } + \examples{ data(WalleyeWad) str(WalleyeWad) @@ -41,4 +42,3 @@ points(numM~age,data=WalleyeWad,pch=19) 'Catch Curve' Mortality } \keyword{datasets} - diff --git a/man/WalleyeWyrlng.Rd b/man/WalleyeWyrlng.Rd index 992f5fc..a2f8d1e 100644 --- a/man/WalleyeWyrlng.Rd +++ b/man/WalleyeWyrlng.Rd @@ -30,6 +30,7 @@ Used in the \href{http://derekogle.com/IFAR/}{Introductory Fisheries Analyses wi \item Recruitment } } + \examples{ data(WalleyeWyrlng) str(WalleyeWyrlng) @@ -41,4 +42,3 @@ plot(yearlings~yrclass,data=WalleyeWyrlng) 'Year-class Strength' Recruitment } \keyword{datasets} - diff --git a/man/WhiteGrunt1.Rd b/man/WhiteGrunt1.Rd index 6d27935..843d3d6 100644 --- a/man/WhiteGrunt1.Rd +++ b/man/WhiteGrunt1.Rd @@ -22,6 +22,7 @@ Catch-at-age for White Grunt (\emph{Haemulon plumierii}) collected from the cent \item Catch curve } } + \examples{ data(WhiteGrunt1) str(WhiteGrunt1) @@ -33,4 +34,3 @@ plot(log(catch)~age,data=WhiteGrunt1) Mortality 'Catch Curve' } \keyword{datasets} - diff --git a/man/WhiteGrunt2.Rd b/man/WhiteGrunt2.Rd index 3f94875..eb63a42 100644 --- a/man/WhiteGrunt2.Rd +++ b/man/WhiteGrunt2.Rd @@ -23,6 +23,7 @@ Ages, lengths, and sexes of White Grunt (\emph{Haemulon plumierii}) collected fr \item von Bertalanffy } } + \examples{ data(WhiteGrunt2) str(WhiteGrunt2) @@ -37,4 +38,3 @@ par(op) Growth 'von Bertalanffy' } \keyword{datasets} - diff --git a/man/WhitefishGSL.Rd b/man/WhitefishGSL.Rd index 0cfcbc1..0593252 100644 --- a/man/WhitefishGSL.Rd +++ b/man/WhitefishGSL.Rd @@ -29,6 +29,7 @@ All data are from summer samples except for Area.IW which is a winter sample \item Catch curve } } + \examples{ data(WhitefishGSL) str(WhitefishGSL) @@ -53,4 +54,3 @@ names(WhitefishGSL1) <- c("age","area","number") Mortality 'Catch Curve' } \keyword{datasets} - diff --git a/man/WhitefishLS.Rd b/man/WhitefishLS.Rd index b9231b5..d45b06f 100644 --- a/man/WhitefishLS.Rd +++ b/man/WhitefishLS.Rd @@ -23,6 +23,7 @@ Landings and value of Lake Whitefish \emph{Coregonus clupeaformis} in Lake Super \item Other } } + \examples{ data(WhitefishLS) str(WhitefishLS) @@ -33,4 +34,3 @@ head(WhitefishLS) Other } \keyword{datasets} - diff --git a/man/WhitefishMB.Rd b/man/WhitefishMB.Rd index 3d79e5b..4b2162d 100644 --- a/man/WhitefishMB.Rd +++ b/man/WhitefishMB.Rd @@ -25,6 +25,7 @@ Ages of Lake Whitefish (\emph{Coregonus clupeaformis}) from four lakes as determ \item Ageing Error } } + \examples{ data(WhitefishMB) str(WhitefishMB) @@ -41,4 +42,3 @@ par(op) Age Precision Bias 'Age Comparison' } \keyword{datasets} - diff --git a/man/WhitefishTB.Rd b/man/WhitefishTB.Rd index 430ddc2..729bcbf 100644 --- a/man/WhitefishTB.Rd +++ b/man/WhitefishTB.Rd @@ -25,6 +25,7 @@ Lake Whitefish (\emph{Coregonus clupeaformis}) stock, recruitment, landings, and \item Recruitment } } + \examples{ data(WhitefishTB) str(WhitefishTB) @@ -39,4 +40,3 @@ par(op) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/YERockfish.rd b/man/YERockfish.rd index 530c9e1..83d1821 100644 --- a/man/YERockfish.rd +++ b/man/YERockfish.rd @@ -26,6 +26,7 @@ Ages, lengths, and maturity for female Yelloweye Rockfish (\emph{Sebastes rubber \item von Bertalanffy } } + \examples{ data(YERockfish) str(YERockfish) @@ -46,4 +47,3 @@ par(op) Growth 'von Bertalanffy' 'Maturity' } \keyword{datasets} - diff --git a/man/YPerchCB1.Rd b/man/YPerchCB1.Rd index bad68df..af147ef 100644 --- a/man/YPerchCB1.Rd +++ b/man/YPerchCB1.Rd @@ -37,6 +37,7 @@ Catch-at-age for Yellow Perch (\emph{Perca flavescens}) from Chequamegon Bay, La \item Catch curve } } + \examples{ data(YPerchCB1) str(YPerchCB1) @@ -74,4 +75,3 @@ plot(log(yc82)~YPerchCB1$age[1:7],main="1982 Year-Class") Mortality 'Catch Curve' } \keyword{datasets} - diff --git a/man/YPerchCB2.Rd b/man/YPerchCB2.Rd index 4233fae..62d9c5f 100644 --- a/man/YPerchCB2.Rd +++ b/man/YPerchCB2.Rd @@ -23,6 +23,7 @@ Yellow Perch (\emph{Perca flavescens}) stock-recruitment by year-class in Chequa \item Recruitment } } + \examples{ data(YPerchCB2) str(YPerchCB2) @@ -37,4 +38,3 @@ par(op) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/YPerchGB.Rd b/man/YPerchGB.Rd index 0446a87..3ea364b 100644 --- a/man/YPerchGB.Rd +++ b/man/YPerchGB.Rd @@ -21,6 +21,7 @@ Yellow Perch (\emph{Perca flavescens}) recruitment time-series for Green Bay, 19 \item Recruitment time-series } } + \examples{ data(YPerchGB) str(YPerchGB) @@ -32,4 +33,3 @@ plot(recruits~year,data=YPerchGB) Recruitment } \keyword{datasets} - diff --git a/man/YPerchGL.Rd b/man/YPerchGL.Rd index 58a23e9..e232f3e 100644 --- a/man/YPerchGL.Rd +++ b/man/YPerchGL.Rd @@ -23,6 +23,7 @@ Yellow Perch (\emph{Perca flavescens}) fork lengths and weights seperated by yea \item Length Frequency } } + \examples{ data(YPerchGL) str(YPerchGL) @@ -37,4 +38,3 @@ par(op) 'Weight-Length' 'Length Frequency' } \keyword{datasets} - diff --git a/man/YPerchRL.Rd b/man/YPerchRL.Rd index dadb0e3..892ab1e 100644 --- a/man/YPerchRL.Rd +++ b/man/YPerchRL.Rd @@ -21,6 +21,7 @@ Yellow Perch (\emph{Perca flavescens}) recruitment time-series for Red Lakes, MN \item Recruitment time-series } } + \examples{ data(YPerchRL) str(YPerchRL) @@ -32,4 +33,3 @@ plot(recruits~year,data=YPerchRL) Recruitment } \keyword{datasets} - diff --git a/man/YPerchSB.Rd b/man/YPerchSB.Rd index fc780f4..e564493 100644 --- a/man/YPerchSB.Rd +++ b/man/YPerchSB.Rd @@ -23,6 +23,7 @@ Yellow Perch (\emph{Perca flavescens}) stock and recruitment by year in South Ba \item Recruitment } } + \examples{ data(YPerchSB) str(YPerchSB) @@ -37,4 +38,3 @@ par(op) 'Stock-Recruit' Recruitment } \keyword{datasets} - diff --git a/man/YPerchSB1.Rd b/man/YPerchSB1.Rd index a91cd61..6f13e10 100644 --- a/man/YPerchSB1.Rd +++ b/man/YPerchSB1.Rd @@ -23,6 +23,7 @@ Length measurements for Yellow Perch (\emph{Perca flavescens}) from two location \item PSD } } + \examples{ data(YPerchSB1) str(YPerchSB1) @@ -37,4 +38,3 @@ par(op) 'Length Frequency' 'Size Structure' PSD } \keyword{datasets} - diff --git a/man/YPerchTL.Rd b/man/YPerchTL.Rd index 9903dfc..71b7ab1 100644 --- a/man/YPerchTL.Rd +++ b/man/YPerchTL.Rd @@ -29,6 +29,7 @@ Lengths and weights for Yellow Perch (\emph{Perca flavescens}) from Trout Lake, \item PSD } } + \examples{ data(YPerchTL) str(YPerchTL) @@ -40,4 +41,3 @@ plot(weight~length,data=YPerchTL) 'Weight-Length' 'Length Frequency' 'Size Structure' PSD } \keyword{datasets} - diff --git a/man/YTFlounder.Rd b/man/YTFlounder.Rd index eb721d1..35deb31 100644 --- a/man/YTFlounder.Rd +++ b/man/YTFlounder.Rd @@ -25,6 +25,7 @@ Ages of commercially caught Georges Bank Yellowtail Flounder (\emph{Limanda ferr \item Ageing Error } } + \examples{ data(YTFlounder) str(YTFlounder) @@ -40,4 +41,3 @@ par(op) Age Precision Bias 'Age Comparison' } \keyword{datasets} -