From 935a99075206bc56a080a34b993d5d91c55725da Mon Sep 17 00:00:00 2001 From: "UENO, M." Date: Wed, 21 May 2025 10:50:24 +0900 Subject: [PATCH 1/6] Update io.github.pemsley.coot.yaml --- io.github.pemsley.coot.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/io.github.pemsley.coot.yaml b/io.github.pemsley.coot.yaml index 1e0d4e2..5f13e51 100644 --- a/io.github.pemsley.coot.yaml +++ b/io.github.pemsley.coot.yaml @@ -146,7 +146,7 @@ modules: sources: - type: git url: https://github.com/boostorg/boost.git - tag: boost-1.87.0 + tag: boost-1.88.0 - name: libdwarf buildsystem: autotools From a9b06ee194b2c71cf2f18c0e9feb303adde846e2 Mon Sep 17 00:00:00 2001 From: "UENO, M." Date: Fri, 6 Jun 2025 16:06:54 +0900 Subject: [PATCH 2/6] Bump to Release-1.1.16 --- io.github.pemsley.coot.yaml | 14 ++------------ 1 file changed, 2 insertions(+), 12 deletions(-) diff --git a/io.github.pemsley.coot.yaml b/io.github.pemsley.coot.yaml index 5f13e51..67a5dab 100644 --- a/io.github.pemsley.coot.yaml +++ b/io.github.pemsley.coot.yaml @@ -331,9 +331,6 @@ modules: GLM_CFLAGS: "-I/app/include" GLM_LIBS: "-L/app/lib -lglm" post-install: - - mv monomers-ccp4-9.0.006 monomers - - mkdir -p ${FLATPAK_DEST}/share/coot/lib/data && mv monomers ${FLATPAK_DEST}/share/coot/lib/data - - mv reference-structures ${FLATPAK_DEST}/share/coot - cp -r python/ ${FLATPAK_DEST}/share/coot/ - install -Dm644 pixmaps/icons/coot.svg ${FLATPAK_DEST}/share/icons/hicolor/scalable/apps/${FLATPAK_ID}.svg - install -Dm644 coot.desktop ${FLATPAK_DEST}/share/applications/${FLATPAK_ID}.desktop @@ -342,12 +339,5 @@ modules: sources: - type: git url: https://github.com/pemsley/coot.git - tag: Release-1.1.15 - - type: archive - url: https://github.com/MonomerLibrary/monomers/archive/refs/tags/ccp4-9.0.006.tar.gz - sha256: 3143b3aba958f370956961f2c78b70acb8e94f840a3aee7beb9f2668253153b4 - strip-components: 0 - - type: archive - url: https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/dependencies/reference-structures.tar.gz - sha256: 44db38506f0f90c097d4855ad81a82a36b49cd1e3ffe7d6ee4728b15109e281a - strip-components: 0 + tag: Release-1.1.16 + From 58efeeb180c815d6682043d059eca0a93fe350b1 Mon Sep 17 00:00:00 2001 From: "UENO, M." Date: Fri, 6 Jun 2025 16:13:36 +0900 Subject: [PATCH 3/6] Update `post-install` in `coot` module --- io.github.pemsley.coot.yaml | 1 + 1 file changed, 1 insertion(+) diff --git a/io.github.pemsley.coot.yaml b/io.github.pemsley.coot.yaml index 67a5dab..8496f27 100644 --- a/io.github.pemsley.coot.yaml +++ b/io.github.pemsley.coot.yaml @@ -331,6 +331,7 @@ modules: GLM_CFLAGS: "-I/app/include" GLM_LIBS: "-L/app/lib -lglm" post-install: + - mkdir -p ${FLATPAK_DEST}/share/coot/ - cp -r python/ ${FLATPAK_DEST}/share/coot/ - install -Dm644 pixmaps/icons/coot.svg ${FLATPAK_DEST}/share/icons/hicolor/scalable/apps/${FLATPAK_ID}.svg - install -Dm644 coot.desktop ${FLATPAK_DEST}/share/applications/${FLATPAK_ID}.desktop From 705c0f0e81455f6d8c2f73a11b22690ef35e8342 Mon Sep 17 00:00:00 2001 From: "UENO, M." Date: Fri, 6 Jun 2025 18:33:48 +0900 Subject: [PATCH 4/6] Bump to `4f510d4` --- io.github.pemsley.coot.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/io.github.pemsley.coot.yaml b/io.github.pemsley.coot.yaml index 8496f27..8762263 100644 --- a/io.github.pemsley.coot.yaml +++ b/io.github.pemsley.coot.yaml @@ -340,5 +340,5 @@ modules: sources: - type: git url: https://github.com/pemsley/coot.git - tag: Release-1.1.16 + commit: 4f510d4268047175eee71692404011f0df20f056 From 3450e11d3bc18e07acecc1168d48a4d8e686dbdd Mon Sep 17 00:00:00 2001 From: "UENO, M." Date: Fri, 6 Jun 2025 16:09:51 +0000 Subject: [PATCH 5/6] Revert boost module version from 1.88.0 to 1.87.0 --- io.github.pemsley.coot.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/io.github.pemsley.coot.yaml b/io.github.pemsley.coot.yaml index 8762263..d217adc 100644 --- a/io.github.pemsley.coot.yaml +++ b/io.github.pemsley.coot.yaml @@ -35,7 +35,7 @@ modules: - type: git url: https://github.com/project-gemmi/gemmi.git tag: v0.7.1 - + - name: fftw2 buildsystem: autotools config-opts: @@ -146,7 +146,7 @@ modules: sources: - type: git url: https://github.com/boostorg/boost.git - tag: boost-1.88.0 + tag: boost-1.87.0 - name: libdwarf buildsystem: autotools From b8f337179618031f12d44e1ad5e9c296209ee22d Mon Sep 17 00:00:00 2001 From: "UENO, M." Date: Fri, 6 Jun 2025 16:17:55 +0000 Subject: [PATCH 6/6] Bump coot module to commit `21edc3a` --- io.github.pemsley.coot.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/io.github.pemsley.coot.yaml b/io.github.pemsley.coot.yaml index d217adc..a91aaa7 100644 --- a/io.github.pemsley.coot.yaml +++ b/io.github.pemsley.coot.yaml @@ -340,5 +340,5 @@ modules: sources: - type: git url: https://github.com/pemsley/coot.git - commit: 4f510d4268047175eee71692404011f0df20f056 + commit: 21edc3a8c08602006a3d57f486444588f9326833