From 89a3d4f43c5820de1d0ce69afbe3041320c89b5d Mon Sep 17 00:00:00 2001 From: daquinteroflex Date: Wed, 12 Nov 2025 15:36:31 +0100 Subject: [PATCH] chore: downgrade h5py for backend --- poetry.lock | 205 ++++++++++++++----------------------------------- pyproject.toml | 2 +- 2 files changed, 59 insertions(+), 148 deletions(-) diff --git a/poetry.lock b/poetry.lock index 431e056c7e..2b302d956a 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 2.1.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.2.1 and should not be changed by hand. 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"Safely add untrusted strings to HTML/XML markup." optional = true python-versions = ">=3.9" groups = ["main"] -markers = "sys_platform == \"darwin\" and (extra == \"dev\" or extra == \"pytorch\" or extra == \"docs\") or extra == \"dev\" or extra == \"docs\" or extra == \"pytorch\"" +markers = "extra == \"dev\" or extra == \"pytorch\" or extra == \"docs\"" files = [ {file = "markupsafe-3.0.3-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:2f981d352f04553a7171b8e44369f2af4055f888dfb147d55e42d29e29e74559"}, {file = "markupsafe-3.0.3-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:e1c1493fb6e50ab01d20a22826e57520f1284df32f2d8601fdd90b6304601419"}, @@ -3679,27 +3665,6 @@ traitlets = ">=5.1" docs = ["myst-parser", "pydata-sphinx-theme", "sphinx", "sphinxcontrib-github-alt", "sphinxcontrib-spelling"] test = ["pep440", "pre-commit", "pytest", "testpath"] -[[package]] -name = "nbsphinx" -version = "0.9.6" -description = "Jupyter Notebook Tools for Sphinx" -optional = true -python-versions = ">=3.6" -groups = ["main"] -markers = "python_version >= \"3.11\" and (extra == \"dev\" or extra == \"docs\")" -files = [ - {file = "nbsphinx-0.9.6-py3-none-any.whl", hash = "sha256:336b0b557945a7678ec7449b16449f854bc852a435bb53b8a72e6b5dc740d992"}, - {file = "nbsphinx-0.9.6.tar.gz", hash = "sha256:c2b28a2d702f1159a95b843831798e86e60a17fc647b9bff9ba1585355de54e3"}, -] - -[package.dependencies] -docutils = ">=0.18.1" -jinja2 = "*" -nbconvert = ">=5.3,<5.4 || >5.4" -nbformat = "*" -sphinx = ">=1.8" -traitlets = ">=5" - [[package]] name = "nbsphinx" version = "0.9.7" @@ -3707,7 +3672,7 @@ description = "Jupyter Notebook Tools for Sphinx" optional = true python-versions = ">=3.6" groups = ["main"] -markers = "python_version < \"3.11\" and (extra == \"dev\" or extra == \"docs\")" +markers = "extra == \"dev\" or extra == \"docs\"" files = [ {file = "nbsphinx-0.9.7-py3-none-any.whl", hash = "sha256:7292c3767fea29e405c60743eee5393682a83982ab202ff98f5eb2db02629da8"}, {file = "nbsphinx-0.9.7.tar.gz", hash = "sha256:abd298a686d55fa894ef697c51d44f24e53aa312dadae38e82920f250a5456fe"}, @@ -3740,7 +3705,7 @@ description = "Python package for creating and manipulating graphs and networks" optional = true python-versions = ">=3.8" groups = ["main"] -markers = "sys_platform == \"darwin\" and (extra == \"dev\" or extra == \"pytorch\" or extra == \"trimesh\" or extra == \"docs\") or extra == \"dev\" or extra == \"trimesh\" or extra == \"docs\" or extra == \"pytorch\"" +markers = "extra == \"dev\" or extra == \"pytorch\" or extra == \"trimesh\" or extra == \"docs\"" files = [ {file = "networkx-2.8.8-py3-none-any.whl", hash = "sha256:e435dfa75b1d7195c7b8378c3859f0445cd88c6b0375c181ed66823a9ceb7524"}, {file = "networkx-2.8.8.tar.gz", hash = "sha256:230d388117af870fce5647a3c52401fcf753e94720e6ea6b4197a5355648885e"}, @@ -3817,7 +3782,7 @@ description = "Fundamental package for array computing in Python" optional = false python-versions = ">=3.10" groups = ["main"] -markers = "python_version < \"3.11\"" +markers = "python_version == \"3.10\"" files = [ {file = "numpy-2.2.6-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:b412caa66f72040e6d268491a59f2c43bf03eb6c96dd8f0307829feb7fa2b6fb"}, {file = "numpy-2.2.6-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:8e41fd67c52b86603a91c1a505ebaef50b3314de0213461c7a6e99c9a3beff90"}, @@ -4370,7 +4335,7 @@ description = "A decorator to automatically detect mismatch when overriding a me optional = true python-versions = ">=3.6" groups = ["main"] -markers = "python_version <= \"3.11\" and (extra == \"dev\" or extra == \"docs\")" +markers = "python_version < \"3.12\" and (extra == \"dev\" or extra == \"docs\")" files = [ {file = "overrides-7.7.0-py3-none-any.whl", hash = "sha256:c7ed9d062f78b8e4c1a7b70bd8796b35ead4d9f510227ef9c5dc7626c60d7e49"}, {file = "overrides-7.7.0.tar.gz", hash = "sha256:55158fa3d93b98cc75299b1e67078ad9003ca27945c76162c1c0766d6f91820a"}, @@ -4822,7 +4787,7 @@ description = "Run a subprocess in a pseudo terminal" optional = true python-versions = "*" groups = ["main"] -markers = "(extra == \"dev\" or extra == \"docs\") and (sys_platform != \"win32\" and sys_platform != \"emscripten\" or os_name != \"nt\")" +markers = "(sys_platform != \"win32\" and sys_platform != \"emscripten\" or os_name != \"nt\") and (extra == \"dev\" or extra == \"docs\")" files = [ {file = "ptyprocess-0.7.0-py2.py3-none-any.whl", hash = "sha256:4b41f3967fce3af57cc7e94b888626c18bf37a083e3651ca8feeb66d492fef35"}, {file = "ptyprocess-0.7.0.tar.gz", hash = "sha256:5c5d0a3b48ceee0b48485e0c26037c0acd7d29765ca3fbb5cb3831d347423220"}, @@ -4851,7 +4816,7 @@ description = "C parser in Python" optional = true python-versions = ">=3.8" groups = ["main"] -markers = "(extra == \"dev\" or extra == \"docs\") and implementation_name == \"pypy\"" +markers = "(extra == \"dev\" or extra == \"docs\") and implementation_name != \"PyPy\"" files = [ {file = "pycparser-2.23-py3-none-any.whl", hash = "sha256:e5c6e8d3fbad53479cab09ac03729e0a9faf2bee3db8208a550daf5af81a5934"}, {file = "pycparser-2.23.tar.gz", hash = "sha256:78816d4f24add8f10a06d6f05b4d424ad9e96cfebf68a4ddc99c65c0720d00c2"}, @@ -5698,23 +5663,6 @@ typing-extensions = {version = ">=4.0.0,<5.0", markers = "python_version < \"3.1 [package.extras] jupyter = ["ipywidgets (>=7.5.1,<9)"] -[[package]] -name = "roman-numerals-py" -version = "3.1.0" -description = "Manipulate well-formed Roman numerals" -optional = true -python-versions = ">=3.9" -groups = ["main"] -markers = "python_version >= \"3.11\" and (extra == \"dev\" or extra == \"docs\")" -files = [ - {file = "roman_numerals_py-3.1.0-py3-none-any.whl", hash = "sha256:9da2ad2fb670bcf24e81070ceb3be72f6c11c440d73bd579fbeca1e9f330954c"}, - {file = "roman_numerals_py-3.1.0.tar.gz", hash = "sha256:be4bf804f083a4ce001b5eb7e3c0862479d10f94c936f6c4e5f250aa5ff5bd2d"}, -] - -[package.extras] -lint = ["mypy (==1.15.0)", "pyright (==1.1.394)", "ruff (==0.9.7)"] -test = ["pytest (>=8)"] - [[package]] name = "rpds-py" version = "0.28.0" @@ -6034,7 +5982,7 @@ description = "Fundamental algorithms for scientific computing in Python" optional = false python-versions = ">=3.10" groups = ["main"] -markers = "python_version < \"3.11\"" +markers = "python_version == \"3.10\"" files = [ {file = "scipy-1.15.3-cp310-cp310-macosx_10_13_x86_64.whl", hash = "sha256:a345928c86d535060c9c2b25e71e87c39ab2f22fc96e9636bd74d1dbf9de448c"}, {file = "scipy-1.15.3-cp310-cp310-macosx_12_0_arm64.whl", hash = "sha256:ad3432cb0f9ed87477a8d97f03b763fd1d57709f1bbde3c9369b1dff5503b253"}, @@ -6197,7 +6145,7 @@ description = "Easily download, build, install, upgrade, and uninstall Python pa optional = true python-versions = ">=3.9" groups = ["main"] -markers = "(extra == \"dev\" or extra == \"docs\") and (extra == \"dev\" or extra == \"pytorch\" or extra == \"docs\") or python_version >= \"3.12\" and (extra == \"dev\" or extra == \"docs\" or extra == \"pytorch\")" +markers = "(extra == \"dev\" or extra == \"docs\" or python_version >= \"3.12\") and (extra == \"dev\" or extra == \"docs\" or extra == \"pytorch\")" files = [ {file = "setuptools-80.9.0-py3-none-any.whl", hash = "sha256:062d34222ad13e0cc312a4c02d73f059e86a4acbfbdea8f8f76b28c99f306922"}, {file = "setuptools-80.9.0.tar.gz", hash = "sha256:f36b47402ecde768dbfafc46e8e4207b4360c654f1f3bb84475f0a28628fb19c"}, @@ -6499,7 +6447,7 @@ description = "Python documentation generator" optional = true python-versions = ">=3.10" groups = ["main"] -markers = "python_version < \"3.11\" and (extra == \"dev\" or extra == \"docs\")" +markers = "extra == \"dev\" or extra == \"docs\"" files = [ {file = "sphinx-8.1.3-py3-none-any.whl", hash = "sha256:09719015511837b76bf6e03e42eb7595ac8c2e41eeb9c29c5b755c6b677992a2"}, {file = "sphinx-8.1.3.tar.gz", hash = "sha256:43c1911eecb0d3e161ad78611bc905d1ad0e523e4ddc202a58a821773dc4c927"}, @@ -6529,43 +6477,6 @@ docs = ["sphinxcontrib-websupport"] lint = ["flake8 (>=6.0)", "mypy (==1.11.1)", "pyright (==1.1.384)", "pytest (>=6.0)", "ruff (==0.6.9)", "sphinx-lint (>=0.9)", "tomli (>=2)", "types-Pillow (==10.2.0.20240822)", "types-Pygments (==2.18.0.20240506)", "types-colorama (==0.4.15.20240311)", "types-defusedxml (==0.7.0.20240218)", "types-docutils (==0.21.0.20241005)", "types-requests (==2.32.0.20240914)", "types-urllib3 (==1.26.25.14)"] test = ["cython (>=3.0)", "defusedxml (>=0.7.1)", "pytest (>=8.0)", "setuptools (>=70.0)", "typing_extensions (>=4.9)"] -[[package]] -name = "sphinx" -version = "8.2.3" -description = "Python documentation generator" -optional = true -python-versions = ">=3.11" -groups = ["main"] -markers = "python_version >= \"3.11\" and (extra == \"dev\" or extra == \"docs\")" -files = [ - {file = "sphinx-8.2.3-py3-none-any.whl", hash = "sha256:4405915165f13521d875a8c29c8970800a0141c14cc5416a38feca4ea5d9b9c3"}, - {file = "sphinx-8.2.3.tar.gz", hash = "sha256:398ad29dee7f63a75888314e9424d40f52ce5a6a87ae88e7071e80af296ec348"}, -] - -[package.dependencies] -alabaster = ">=0.7.14" -babel = ">=2.13" -colorama = {version = ">=0.4.6", markers = "sys_platform == \"win32\""} -docutils = ">=0.20,<0.22" -imagesize = ">=1.3" -Jinja2 = ">=3.1" -packaging = ">=23.0" -Pygments = ">=2.17" -requests = ">=2.30.0" -roman-numerals-py = ">=1.0.0" -snowballstemmer = ">=2.2" -sphinxcontrib-applehelp = ">=1.0.7" -sphinxcontrib-devhelp = ">=1.0.6" -sphinxcontrib-htmlhelp = ">=2.0.6" -sphinxcontrib-jsmath = ">=1.0.1" -sphinxcontrib-qthelp = ">=1.0.6" -sphinxcontrib-serializinghtml = ">=1.1.9" - -[package.extras] -docs = ["sphinxcontrib-websupport"] -lint = ["betterproto (==2.0.0b6)", "mypy (==1.15.0)", "pypi-attestations (==0.0.21)", "pyright (==1.1.395)", "pytest (>=8.0)", "ruff (==0.9.9)", "sphinx-lint (>=0.9)", "types-Pillow (==10.2.0.20240822)", "types-Pygments (==2.19.0.20250219)", "types-colorama (==0.4.15.20240311)", "types-defusedxml (==0.7.0.20240218)", "types-docutils (==0.21.0.20241128)", "types-requests (==2.32.0.20241016)", "types-urllib3 (==1.26.25.14)"] -test = ["cython (>=3.0)", "defusedxml (>=0.7.1)", "pytest (>=8.0)", "pytest-xdist[psutil] (>=3.4)", "setuptools (>=70.0)", "typing_extensions (>=4.9)"] - [[package]] name = "sphinx-book-theme" version = "1.1.4" @@ -7036,7 +6947,7 @@ description = "A lil' TOML parser" optional = false python-versions = ">=3.8" groups = ["main"] -markers = "python_version < \"3.11\" and (extra == \"dev\" or extra == \"docs\")" +markers = "python_version == \"3.10\" and (extra == \"dev\" or extra == \"docs\")" files = [ {file = "tomli-2.3.0-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:88bd15eb972f3664f5ed4b57c1634a97153b4bac4479dcb6a495f41921eb7f45"}, {file = "tomli-2.3.0-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:883b1c0d6398a6a9d29b508c331fa56adbcdff647f6ace4dfca0f50e90dfd0ba"}, @@ -7113,7 +7024,7 @@ description = "Tensors and Dynamic neural networks in Python with strong GPU acc optional = true python-versions = ">=3.10" groups = ["main"] -markers = "sys_platform == \"darwin\" and (extra == \"dev\" or extra == \"pytorch\")" +markers = "(extra == \"dev\" or extra == \"pytorch\") and sys_platform == \"darwin\"" files = [ {file = "torch-2.9.0-cp310-cp310-manylinux_2_28_aarch64.whl", hash = "sha256:030bbfe367379ae6a4ae4042b6c44da25383343b8b3c68abaa9c7231efbaf2dd"}, {file = "torch-2.9.0-cp310-cp310-manylinux_2_28_x86_64.whl", hash = "sha256:51cb63902182a78e90886e8068befd8ea102af4b00e420263591a3d70c7d3c6c"}, @@ -7182,7 +7093,7 @@ description = "Tensors and Dynamic neural networks in Python with strong GPU acc optional = true python-versions = ">=3.10" groups = ["main"] -markers = "sys_platform != \"darwin\" and (extra == \"dev\" or extra == \"pytorch\")" +markers = "(extra == \"dev\" or extra == \"pytorch\") and sys_platform != \"darwin\"" files = [ {file = "torch-2.9.0+cpu-cp310-cp310-manylinux_2_28_aarch64.whl", hash = "sha256:b224792ea567b52c7f1ce1d789567f6920e06fd3b339fa1e1b05948845f783ad"}, {file = "torch-2.9.0+cpu-cp310-cp310-manylinux_2_28_x86_64.whl", hash = "sha256:bd2a257e670ede9fc01c6d76dccdc473040913b8e9328169bf177dbdc38e2484"}, @@ -7630,7 +7541,7 @@ description = "N-D labeled arrays and datasets in Python" optional = false python-versions = ">=3.10" groups = ["main"] -markers = "python_version < \"3.11\"" +markers = "python_version == \"3.10\"" files = [ {file = "xarray-2025.6.1-py3-none-any.whl", hash = "sha256:8b988b47f67a383bdc3b04c5db475cd165e580134c1f1943d52aee4a9c97651b"}, {file = "xarray-2025.6.1.tar.gz", hash = "sha256:a84f3f07544634a130d7dc615ae44175419f4c77957a7255161ed99c69c7c8b0"}, @@ -7734,4 +7645,4 @@ vtk = ["vtk"] [metadata] lock-version = "2.1" python-versions = ">=3.10,<3.14" -content-hash = "deab3d5c68d8ee1fce2e7c86f2c90d1b601025f5ff2c5465767c0bc479b992be" +content-hash = "9a217bd12d87a82f8fa9c0e1a2047e922714440ccb16c89ddec08773828acfd7" diff --git a/pyproject.toml b/pyproject.toml index c5ae51b5a7..b69d2d5cad 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -27,7 +27,7 @@ pyroots = ">=0.5.0" xarray = ">=2023.08" importlib-metadata = ">=6.0.0" h5netcdf = "1.0.2" -h5py = "^3.0.0" +h5py = ">=3.0.0,<3.15" rich = "^13.0" numpy = "*" matplotlib = "*"