dependencies and datatype

[nagoue]

Hi,

I have installed qiime2_wrappers to our galaxy18.05 instance. I faced problem holding dependencies with conda from the web interface. So I added qiime2/label/r2018.4,qiime2,biocore channels in galaxy.yml file to success in dependencies installation. However while tools and dependencies were installed successfully, I ended up with a qiime not found when testing tools inside galaxy.
So finally, (not sure this is the best way) but I installed dependencies from command line in conda env.
Do you have a better way to proceed ?

Also, I realized that qza format is much more complex format that previously thought and a new datatype has to be set in Galaxy. Did you modify the binary.py to handle it or create a new script ? Could you share or help setting up this datatype ?

Thanks!

[nagoue]

Hi,

So finally what did work is to add a new "qza" datatype in datatypes_conf.xml file:
<datatype extension="qza" type="galaxy.datatypes.binary:CompressedZipArchive" display_in_upload="true" />