FLR documentation: tutorials, manuals, examples and others
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R Updated FLBEIA tutorials Oct 2, 2017
docs Updated Mixed fisheries doc Feb 8, 2018
images images folder and FLBEIA logo added Sep 29, 2017
src conditioning one minor changes Oct 19, 2017
.Rhistory upload the conditioningOne data to doc/docs/src Oct 19, 2017
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A_quick_introduction_to_FLR.Rmd Fixing last few broken links Sep 18, 2017
An_introduction_to_MSE_using_FLR.Rmd Updated index and menus Sep 15, 2017
An_overview_of_the_FLCore_classes.Rmd Update Sep 14, 2017
Conditioning_FLBEIA.Rmd minor changes conditioningOne Oct 19, 2017
Data_Poor_MSE_in_FLBEIA.Rmd Update data poor Oct 2, 2017
FLBEIA_A_Simple_Example.Rmd Updated FLBEIA tutorials Oct 2, 2017
FLBEIA_An_Example_with_multiple_dimensions.Rmd Updated FLBEIA tutorials Oct 2, 2017
Loading_your_data_into_FLR.Rmd Use readVPAFile to read a single variable Dec 4, 2017
Makefile Fixing broken links Sep 18, 2017
Mixed_Fisheries_Projections_with_FLasher.Rmd Updated Mixed fisheries doc Feb 8, 2018
Modelling_growth_and_its_uncertainty_in_FLa4a.Rmd Update Sep 14, 2017
Modelling_stock_recruitment_with_FLSR.Rmd Fixing broken links Sep 18, 2017
Natural_mortality_modelling_in_FLa4a.Rmd Fixing last few broken links Sep 18, 2017
Plotting_FLR_objects_using_lattice.Rmd Fixing broken links Sep 18, 2017
README.md Broken links Sep 18, 2017
Reference_points_for_fisheries_management_with_FLBRP.Rmd Minor edits Apr 23, 2018
Running_Medium_Term_Forecasts_with_FLash.Rmd Corrected target in FLash::fwd(ssb) Feb 8, 2018
Running_Medium_Term_Forecasts_with_FLasher.Rmd Minor change to section heading Dec 7, 2017
Setting_Stock_Recruitment_in_FLasher_Projections.Rmd Added table of available SR models to SR FLasher tutorial Nov 27, 2017
Short_Term_Forecasting_for_advice_using_FLash.Rmd Fixing broken links Sep 18, 2017
Statistical_catch_at_age_models_in_FLa4a.Rmd Update Sep 14, 2017
Stock_assessment_using_eXtended_Survivors_Analysis_with_FLXSA.Rmd Fixing broken links Sep 18, 2017
Testing_Management_Strategies_in_FLBEIA.Rmd Updated Testing_MSs Oct 2, 2017
Units_of_measurement_in_FLR_objects.Rmd Update Sep 14, 2017
Using_Assessment_models_in_the_MP_FLBEIA.Rmd Updated FLBEIA tutorials Oct 2, 2017
Using_information_on_life_history_relationships.Rmd Added FLife tutorial Dec 12, 2017
Using_the_FLasher_Plugin.Rmd Added tutorial on using the FLasher plugin Nov 24, 2017
_site.yml Typo in menu setting Oct 2, 2017
bibliography.bib Added FLife tutorial Dec 12, 2017
ggplotFL_plotting_FLR_objects_with_ggplot2.Rmd Updated index and menus Sep 15, 2017
index.md Added FLife tutorial Dec 12, 2017

README.md

FLR documentation

This repository contains the material for the tutorials on FLR published at http://flr-project.org/doc

Structure

  • Rmd SOURCE rmarkdown documents
  • docs/ html pages to appear on website
  • docs/pdf pdf versions of tutorials
  • docs/R R codee in tutorials
  • Makefile To create html pdf and R files from rmd
  • bibliography.bib BibTeX document available to all documents
  • index.md Markdown file for the docs/index.html file
  • _site.yml rmarkdown::render configuration

Useful links