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96 followers · 34 following

Achievements

Achievement: Pull Sharkx3Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor
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Achievements

Achievement: Pull Sharkx3Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor
BetaSend feedback

Organizations

@beiko-lab @Neuroglycerin @pha4ge @CanCOGeN-V
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fmaguire/README.md

Finlay Maguire's github stats

From anuraghazra's github-readme-stats project.

50%: Microbial bioinformatics, antimicrobial resistance, metagenomics, phylogenetics, machine learning. Working with CARD, PHAC-NML, IRIDA, PHA4GE, CanCOGeN.

50%: Using data analytics/science methods in interdisciplinary collaborations to try and foster positive social impacts, e.g., working with local shelters to identify gaps in provision, physicians to improve healthcare among refugee women, and psychologists to explore effects of social media on language development in autistic individuals.

See Google Scholar for a list of publications or my website for an intermittently updated version of my academic CV.

Pinned

  1. pha4ge/hAMRonization pha4ge/hAMRonization Public

    Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure

    Python 113 24

  2. arpcard/rgi arpcard/rgi Public

    Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

    Python 306 73

  3. etetoolkit/ete etetoolkit/ete Public

    Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the …

    Python 752 215

  4. evolving_threat_detector evolving_threat_detector Public

    Identifying changes in resistome relative to closest relatives and contextualising results

    Python 2

  5. parKour parKour Public

    Paired Arrangement of Reads via Kmeans On Unlabelled RNA-Seq

    C++

  6. cov-lineages/pangolin cov-lineages/pangolin Public

    Software package for assigning SARS-CoV-2 genome sequences to global lineages.

    Python 413 108