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  • Arctic Code Vault Contributor

Organizations

@beiko-lab @Neuroglycerin @pha4ge @CanCOGeN-V
fmaguire/README.md

Finlay Maguire's github stats

From anuraghazra's github-readme-stats project.

50%: Microbial bioinformatics, antimicrobial resistance, metagenomics, phylogenetics, machine learning. Working with CARD, PHAC-NML, IRIDA, PHA4GE, CanCOGeN.

50%: Using data analytics/science methods in interdisciplinary collaborations to try and foster positive social impacts, e.g., working with local shelters to identify gaps in provision, physicians to improve healthcare among refugee women, and psychologists to explore effects of social media on language development in autistic individuals.

See Google Scholar for a list of publications or my website for an intermittently updated version of my academic CV.

Pinned

  1. Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the …

    Python 474 156

  2. Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

    Python 98 33

  3. Tool to predict the presence of antimicrobial resistance in clinical metagenomes

    Python 7 1

  4. Workflow to generate the shared orthologue network between input fastas e.g. plasmids

    Python 1

  5. Paired Arrangement of Reads via Kmeans On Unlabelled RNA-Seq

    C++

  6. Identifying changes in resistome relative to closest relatives and contextualising results

    Python 2

1,081 contributions in the last year

Dec Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Mon Wed Fri

Contribution activity

November 2020

Created 2 repositories

Created a pull request in nextstrain/nextclade that received 2 comments

Update CLI readme to install latest alpha

As pointed out in #252 the current beta package in npm is quite old (0.4.0) so minor change to the documentation to point to the alpha version as t…

+2 −2 2 comments
Opened 3 other pull requests in 3 repositories
jaleezyy/covid-19-signal
1 merged
arpcard/rgi
1 merged
pha4ge/hAMRonization
1 merged

Created an issue in nextstrain/nextclade that received 5 comments

"Unknown Error" for all sequences in CLI with geneMap (v0.7.5, v0.8.0-alpha.6)

Receiving the Error: in sequence "Canada/BC_37_0-2/2020": Unknown error. Please note that this sequence will not be included in the results. error …

5 comments
Opened 1 other issue in 1 repository
fmaguire/filter_flow
1 open

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