Supplemental materials for Maguire et al., 2014 paper. See readme for details.
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REFGEN_indices
all_taxa_represented_in_phylogenies
figure_3_alignment
supplemental_masked_alignments
supplemental_phylogenies
LICENSE
README.md

README.md

README

A repository to contain supplemental materials for:

Maguire, F., Henriquez, F.L., Leonard, G., Dacks, J.B., Brown, M.W., Richards T.A.R., Complex patterns of gene fusion and fission in the eukaryotic folate biosynthesis pathway Genome Biology and Evolution, 2014

Contents:

  • supplemental_phylogenies: Fig. S1-S7 and phylogeny used for Fig. 3 (all in pdf format)
  • supplemental_masked_alignments: Fig. S1-S6 mask in mase format
  • figure_S7_concatenated_alignment: Fig. S7 alignment (phylip format)
  • figure_3_alignment: Fig. 3 alignment and sequences used (fasta format)
  • all_taxa_represented_in_phylogenies: lists of all taxa in Fig 3. and Fig. S1-S7
  • REFGEN_indices: indices for renaming REFGEN tags (contains tags not in final version of trees)