README

A repository to contain supplemental materials for:

Maguire, F., Henriquez, F.L., Leonard, G., Dacks, J.B., Brown, M.W., Richards T.A.R., Complex patterns of gene fusion and fission in the eukaryotic folate biosynthesis pathway Genome Biology and Evolution, 2014

Contents:

• supplemental_phylogenies: Fig. S1-S7 and phylogeny used for Fig. 3 (all in pdf format)
• supplemental_masked_alignments: Fig. S1-S6 mask in mase format
• figure_S7_concatenated_alignment: Fig. S7 alignment (phylip format)
• figure_3_alignment: Fig. 3 alignment and sequences used (fasta format)
• all_taxa_represented_in_phylogenies: lists of all taxa in Fig 3. and Fig. S1-S7
• REFGEN_indices: indices for renaming REFGEN tags (contains tags not in final version of trees)