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README.rst

Dendrogenous

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Module designed to facilitate the rapid generation of phylogenies using a MYSQL genome database

  • Free software: BSD license
  • Sequences need to be in a MySQL database containing a table "cider"
    which has sequences and protein_ID fields corresponding to blastdb

Features

Take in a multi-protein fasta file and generates rapid phylogenies for each sequence based on BLAST homology to genomes in the MYSQL database specified in SETTINGS.json

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Batch parallel phylogeny creator

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