sample_2114 - 7 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

00002 (Unknown)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	RiPP-like	200,213	210,497

00004 (Unknown)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	siderophore	2,744	19,232
Region 4.2	NRPS	54,425	101,600

00011 (Unknown)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	terpene	59,593	75,051

00015 (Unknown)

Region	Type	From	To	Most similar known cluster		Similarity
Region 15.1	T3PKS	1	36,177

00016 (Unknown)

Region	Type	From	To	Most similar known cluster		Similarity
Region 16.1	cyclic-lactone-autoinducer	18,817	39,577

00017 (Unknown)

Region	Type	From	To	Most similar known cluster		Similarity
Region 17.1	siderophore	25,098	40,113

Region	Type	From	To	Similarity
Region 2.1	RiPP-like	200,213	210,497
Region 4.1	siderophore	2,744	19,232
Region 4.2	NRPS	54,425	101,600
Region 11.1	terpene	59,593	75,051
Region 15.1	T3PKS	1	36,177
Region 16.1	cyclic-lactone-autoinducer	18,817	39,577
Region 17.1	siderophore	25,098	40,113

No secondary metabolite regions were found in these records:: 00001 (Unknown); 00003 (Unknown); 00005 (Unknown); 00006 (Unknown); 00007 (Unknown); 00008 (Unknown); 00009 (Unknown); 00010 (Unknown); 00012 (Unknown); 00013 (Unknown); 00014 (Unknown); 00018 (Unknown); 00019 (Unknown); 00020 (Unknown); 00021 (Unknown); 00022 (Unknown); 00023 (Unknown); 00024 (Unknown); 00025 (Unknown); 00026 (Unknown); 00027 (Unknown); 00028 (Unknown); 00029 (Unknown); 00030 (Unknown); 00031 (Unknown); 00032 (Unknown); 00033 (Unknown); 00034 (Unknown); 00035 (Unknown); 00036 (Unknown)

Compact view

00002 - Region 1 - RiPP-like

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Location: 200,213 - 210,497 nt. (total: 10,285 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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00004 - Region 1 - siderophore

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Location: 2,744 - 19,232 nt. (total: 16,489 nt) Show pHMM detection rules used

siderophore: IucA_IucC

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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00004 - Region 2 - NRPS

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Location: 54,425 - 101,600 nt. (total: 47,176 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

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core biosynthetic genes

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NRPS/PKS domains

NRPS/PKS modules

Detailed domain annotation

Selected features only

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 2, location 54424 - 101600:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (val - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

DPNIGPHN_01100

Search NORINE for peptide: strict or relaxed

AMP-binding (417..807): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAfWLGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 90% (moderate)

AMP-binding (1442..1834): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAmSIGaViK
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 70% (weak)

00011 - Region 1 - terpene

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Location: 59,593 - 75,051 nt. (total: 15,459 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

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resistance

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00015 - Region 1 - T3PKS

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Location: 1 - 36,177 nt. (total: 36,177 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

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resistance

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00016 - Region 1 - cyclic-lactone-autoinducer

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Location: 18,817 - 39,577 nt. (total: 20,761 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

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00017 - Region 1 - siderophore

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Location: 25,098 - 40,113 nt. (total: 15,016 nt) Show pHMM detection rules used

siderophore: IucA_IucC

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

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Gene details

Select a gene to view the details available for it