Heron - high accuracy GPU nanopore basecaller

Instalation

Install trans-decoder (https://github.com/fmfi-compbio/transducer_decoder)
Install requirements pip install -r requirements.txt
Download http://compbio.fmph.uniba.sk/heron/network.pth into weights directory.

python3 basecall.py --directory <directory_with_reads> --output some.fasta

Name		Name	Last commit message	Last commit date
Latest commit History 10 Commits
weights		weights
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
backend.py		backend.py
basecall.py		basecall.py
model.py		model.py
network.py		network.py
requirements.txt		requirements.txt