The echinoderm project on iNaturalist
This repository contains the code and data to generate the papers submitted about the echinoderm project on iNaturalist.
About the project
We started a project on Echinoderms at iNaturalist to gather observations worldwide, and across taxa. Our goal is to improve our knowledge of species distributions, variation, and biology, and to educate the public about the diversity of Echinoderms.
How to run the code?
You need:
- a functional LaTeX installation (here I use XeTeX)
- R with the following packages:
The project includes a Makefile
, so if you have make
installed, typing make all
inside the folder will generate the manuscript in PDF format.
If you don't have make
, you can first generate the tex
file in R:
library(knitr)
knit("2015-Michonneau+Paulay-ReefEncounters.Rnw")
and then compile the file generated (iNaturalist-paper.tex
) using
XeTeX
.
(I used Ubuntu 14.10 to generate the files included in this repository.)
Citation & License
The content of this repository is under a Creative Commons Attribution License CC-BY 4.0.
Michonneau F. & Paulay G., 2015. Using iNaturalist to learn more about echinoderms. Available from figshare (doi:10.6084/m9.figshare.1309937)
The initial version of this manuscript has been submitted to Reef Encounter on
June 6th, 2014. It has been tagged v20140606.0+reefencounter
. The
full repository for this version can be downloaded
here,
and the submitted version of the PDF can be downloaded
here.
The revised version of the manuscripted has been submitted on February
16th, 2015 and has been tagged v20150216.1+reefencounter
. The full
repository for this version can be downloaded
here,
and the submitted version of the PDF can be downloaded
here.
After the editor found a few typos, another version has been released and tagged
v20150216.2+reefencounter
. The full repository for this version can be
downloaded here,