From cafc672e96392ab95085ad21edaf15536d4049b0 Mon Sep 17 00:00:00 2001 From: Charlotte Soneson Date: Sat, 4 May 2024 12:26:18 +0200 Subject: [PATCH] Fix typo --- inst/extdata/process_basic_template.Rmd | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/inst/extdata/process_basic_template.Rmd b/inst/extdata/process_basic_template.Rmd index bcec775..b09f19a 100644 --- a/inst/extdata/process_basic_template.Rmd +++ b/inst/extdata/process_basic_template.Rmd @@ -1098,7 +1098,7 @@ The table below provides autogenerated links to the [UniProt](https://www.uniprot.org/), [AlphaFold](https://alphafold.ebi.ac.uk/), [Complex Portal](https://www.ebi.ac.uk/complexportal/home) and -[BioGRID pages](https://thebiogrid.org/) (as well as selected +[BioGRID](https://thebiogrid.org/) pages (as well as selected organism-specific databases) for the protein IDs corresponding to each feature in the data set. The 'pid' column represents the unique feature ID used by `einprot`, and @@ -1262,7 +1262,7 @@ samples are split by the `group` annotation and clustered within each such group. In addition, an annotation column with the fraction of missing values for each feature is added. -```{r save-heatmap, results="hide"} +```{r save-heatmap, message=FALSE, results="hide"} ## Save to pdf (show row names, but no row dendrogram, order samples by group) if (addHeatmaps) { pdf(sub("\\.Rmd$", "_heatmap_centered.pdf", knitr::current_input(dir = TRUE)),