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README.md

Open CGA prototype

A prototype interface that demonstrates how data retrieved from the Open CGA API could be navigated and explored.

  • List projects in a table, showing how many studies each sample has
  • For each project, list studies, showing how many files, samples, individuals and jobs they have
  • For each study provide a summary and link to views of files, samples and individuals
  • Focus on samples, provide examples of how to filter large sample sets based on study variable sets

Install

A Node.js app using ExpressJS. It uses a git submodule to include jsorolla. jsorolla provides an Open CGA JS api client, written in ES6

  • Clone and run npm install
  • Run git submodule update --init from lib to pull in jsorolla
  • Requires Node v6 or greater for ES6

Screenshots

Open CGA prototype Advanced filters in action Open CGA prototype, screenshot of study