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Repo for running command line-based BLAST in Jupyter environment provided via Binder.
using YeastMine (populated by SGD and powered by InterMine) to mine yeast Saccharomyces cerevisiae genetics data
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
Binderized MUSCLE: multiple sequence alignment with high accuracy and high throughput
Run Circos software in a Jupyter environment served by MyBinder.org.
Repo for running command line-based PatMatch in Jupyter environment provided via Binder.
A collection of demonstrations of useful resources for command line / Jupyter session manipulation of sequence files.
A repository for code that generates various simulated data.
programs and scripts for molecular structure analysis
Facilitating exploring a large table from Nadal-Ribelles et al 2019 PMID: 30718850 in your browser.
MFannot software available in a Jupyter environment running via the MyBinder service.
Guide to getting started with using Intermine sites and Jupyter using MyBinder-served Jupyter notebooks.
A notebook to demonstrate a function for comparing ranked lists.
Binderized version of Tyler Morgan-Wall's Rayshader package https://www.rayshader.com/
Scripts that make plots of generalized data.
A collection of demonstrations of useful resources for command line / Jupyter session manipulation of structure files.
launchable, working Jupyter-baseed environment with bio3d package for Biological Structure Analysis running in RStudio with some examples
Bernhard10's personal fork of biopython where he added parsing of missing residues from PDB header
SynChro software available in a Jupyter environment running via the Binder service
collection of scripts that chain together other scripts by preparing and processing/transforming data.
bokeh plots working in active Jupyter environment served by Binder service.
Repository which will allow launching Jupyter Notebooks via Binder service, with Qgrid functionality
Notebook to demonstrate draggable legends in Matplotlib.
Intermine Web Services available in a Jupyter environment running via the Binder service
running ridgeline plots in R in Jupyter environment served by MyBinder.org
MCscan software available in a Jupyter environment running via the Binder service
MCscan software and command line-based BLAST available in a Jupyter environment running via the Binder service
Analyze ribonucleotide incorporation data from Clausen et al. 2015 data using script `plot_5prime_end_from_bedgraph.py`.
Jupyter notebooks hosted via mybinder.org where cairo works