Biological-sequence-compression-algorithms

SeqCompress

1. Preprocess.py and SeqCompress_main.py were scripts for the first algorithm.
2. Using preprocess.py to process the origin sequence.
3. Using SeqCompress_main.py to finish the compressing.We supply an function,users can change the sequence and length according to their own requirements .

Segment_repetition_compress

This script was based on the SeqCompress.py.

SeedBasedCompressing

1. In the script named SeedBasedCompressing.py,we supply the functions of seed generating,sequence extending and sequence compressing.
2. Users can change the origin sequence,length of the seed based. on their own requirements.