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@fowler-lab

Predicting AMR de novo

Popular repositories

  1. pyniverse Public

    generic Python package for parsing, analysing and plotting Zooniverse data classification export files

    Python 5 1

  2. amygda Public

    Automated Mycobacterial Growth Detection Algorithm, funded by NIHR Oxford Biomedical Research Centre

    Python 3

  3. bashthebug Public

    Python

  4. seqtreat Public

    Python code to validate the spreadsheets containing M. tuberculosis AST data donated to the project. Likely to expand in future.

    Python

  5. jupyter-notebook-example Public

    A prototype jupyter notebook

    Jupyter Notebook

  6. molstar-mutation Public

    Forked from molstar/molstar

    A comprehensive macromolecular library adapted for visualisation of protein mutations

    TypeScript

Repositories

  • sbmlcore Public

    Collection of core classes and functions for structure-based machine learning to predict antimicrobial resistance

    Jupyter Notebook 0 0 3 0 Updated May 25, 2022
  • Inh_resistance Public
    Jupyter Notebook 0 0 0 0 Updated May 25, 2022
  • bashthebug-consensus-dataset Public

    Dataset of classifications made by BashTheBug volunteers used to decide how to form a consensus

    Jupyter Notebook 0 MIT 0 0 0 Updated May 24, 2022
  • tb-rbfe-setup Public

    Files and scripts to rerun A90V DNAG and S450L RBFE calculations

    Shell 0 MIT 0 0 0 Updated May 24, 2022
  • molstar-mutation Public

    A comprehensive macromolecular library adapted for visualisation of protein mutations

    TypeScript 0 MIT 82 0 10 Updated Apr 29, 2022
  • tb-rnap-compensation Public

    Investigation of the role of compensatory mutations in rifamycin resistance in M. tuberculosis

    Jupyter Notebook 0 0 0 0 Updated Apr 14, 2022
  • tb-lineage-mutations Public

    Reference list of lineage-defining mutations as derived from SNP-IT

    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 6, 2022
  • cryptic-ecoffs Public

    Data and code to reproduce the figures and tables in the CRyPTIC ECOFF/ECV paper

    Jupyter Notebook 0 1 0 0 Updated Feb 2, 2022
  • who_catalogue_conversion Public

    Convert mutations from the WHO TB catalogue to GARC

    Python 0 0 0 0 Updated Dec 8, 2021
  • jupyter-notebook-example Public

    A prototype jupyter notebook

    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 10, 2021
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