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Edited the matplotlib image plotting to look more reasonable.\r\n\r\n* A lot of changes moving over to matplotlib. A BaseWindow class now exists and has been restructured so a lot of the code can be shared between all window instances. A new convention was introduced where the base class methods all begin with base_ to make it clear these are from the base class and ones marks base_essential_ should be overwritten for the specific things the child class needs\r\n\r\n* PLT now used in every window. Some np.where have been replaced with np.nonzero. Defaulting to using PyQt6 signals (now in the BaseWindow) since PLT ones were not as reliable.\r\n\r\n* Propagating the PLT change to Timepix and RTD windows. The detector display alo now has the ability to indicate it is visible but not the active window\r\n\r\n* matching colours etc to original pyqt verions of plots\r\n\r\n* The base_window classes now have a simple function to label their plots within the axes. Also fixed bug which stopped the light curves from plotting as the correct aspect ratio in tests.\r\n\r\n* fixed bug caused by being crazy with the mouse on GUI start-up. If QSignals are sent too early in the process they seem to block future signals, Fixed by manually fluching pending signals at the end of the GUI start-up.\r\n\r\n* Fixed issue where plot stopped taking up available space and arc-distance contours now work fine with all images\r\n\r\n---------\r\n\r\nCo-authored-by: Kristopher Cooper <kris@infra04-wg012.eduroam.wireless.umn.edu>\r\nCo-authored-by: Kristopher Cooper <kris@Kristophers-MacBook-Pro.local>","shortMessageHtmlLink":"Pyqtgraph to plt (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2182683807\" data-permission-text=\"Title is private\" data-url=\"https://github.com/foxsi/GSE-FOXSI-4/issues/58\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/foxsi/GSE-FOXSI-4/pull/58/hovercard\" href=\"https://github.com/foxsi/GSE-FOXSI-4/pull/58\">#58</a>)"}},{"before":"65368fac2f901b973a84a2d7cff8cadd02d6195b","after":"ece04526f76bd5e2a024b6a48fcca2409026d47f","ref":"refs/heads/main","pushedAt":"2024-03-06T19:33:30.000Z","pushType":"pr_merge","commitsCount":7,"pusher":{"login":"KriSun95","name":"Kris Cooper","path":"/KriSun95","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/43237137?s=80&v=4"},"commit":{"message":"Merge pull request #56 from KriSun95/use-json\n\nUse json","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2172266204\" data-permission-text=\"Title is private\" data-url=\"https://github.com/foxsi/GSE-FOXSI-4/issues/56\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/foxsi/GSE-FOXSI-4/pull/56/hovercard\" href=\"https://github.com/foxsi/GSE-FOXSI-4/pull/56\">#56</a> from KriSun95/use-json"}},{"before":"1c57c5f5fe51587cbd650c1868a93627da743772","after":"65368fac2f901b973a84a2d7cff8cadd02d6195b","ref":"refs/heads/main","pushedAt":"2024-03-06T17:27:56.000Z","pushType":"pr_merge","commitsCount":11,"pusher":{"login":"KriSun95","name":"Kris Cooper","path":"/KriSun95","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/43237137?s=80&v=4"},"commit":{"message":"Merge pull request #55 from foxsi/uplink\n\nUplink","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2171916429\" data-permission-text=\"Title is private\" data-url=\"https://github.com/foxsi/GSE-FOXSI-4/issues/55\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/foxsi/GSE-FOXSI-4/pull/55/hovercard\" href=\"https://github.com/foxsi/GSE-FOXSI-4/pull/55\">#55</a> from foxsi/uplink"}},{"before":"bc533a68b1321ff0c81e81234a14e3e250b09d66","after":"c0f12b22c8b343efee9e60afd0a1bd0dcd0fe246","ref":"refs/heads/uplink","pushedAt":"2024-03-06T17:25:24.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"thanasipantazides","name":"Athanasios Pantazides","path":"/thanasipantazides","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46729485?s=80&v=4"},"commit":{"message":"communication.py","shortMessageHtmlLink":"communication.py"}},{"before":"c661dff0f9ad62271e25df353131337690b15304","after":"bc533a68b1321ff0c81e81234a14e3e250b09d66","ref":"refs/heads/uplink","pushedAt":"2024-03-06T17:10:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"KriSun95","name":"Kris Cooper","path":"/KriSun95","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/43237137?s=80&v=4"},"commit":{"message":"Delete FoGSE/gse_no_uplink.py","shortMessageHtmlLink":"Delete FoGSE/gse_no_uplink.py"}},{"before":"616e6345f2428469e58906f24b03f332d5f96381","after":"c661dff0f9ad62271e25df353131337690b15304","ref":"refs/heads/uplink","pushedAt":"2024-03-05T22:41:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"thanasipantazides","name":"Athanasios Pantazides","path":"/thanasipantazides","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46729485?s=80&v=4"},"commit":{"message":"adds ability to pass Timepixparser test data when run as __main__ (no edits to the parser function itself). 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