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00_Subassembly
01_extract_counts
02_initial_score
03_toss_outliers
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README.md

README.md

PUBS

This is the git repository for the pipeline created by the UCSF PUBS class to analyze data generated in the EMPIRC-BC experements of ubiquitin.

the piple line takes raw fastq files generated on Illumina deep sequencing platforms, counts Ub alleles, scores allele fitness, and generates a heatmap of allele fitness

the usage for each script in a module is found in the read me of each module and in the methods section of our publication.

cheers