Skip to content

REALPHY - The Reference sequence Alignment based Phylogeny builder is a free online pipeline that can infer phylogenetic trees from whole genome sequence data. The user only has to provide a small number of reference genomes in either FASTA or Genbank format (contigs or fully sequenced genomes) as well as a number of other query genomes which ca…

Notifications You must be signed in to change notification settings

fredeBio/REALPHY

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

67 Commits
 
 
 
 

Repository files navigation

This is a link to the official REALPHY website.

The manual for REALPHY is available here.

The terms of use

The developers of the REALPHY give permission to you and your institution to use the REALPHY software for internal, research purposes, on the following conditions:

  1. The REALPHY software will be used by you and/or your institution solely for non-commercial purposes, except with express permission from the authors.
  2. You may provide us with feedback on the use of the REALPHY software in your research, and we are permitted to use any information you provide in making changes to REALPHY.
  3. Any risk associated with using the REALPHY software is with you and your institution.
  4. The REALPHY software should be cited in any publication(s) reporting on data obtained by using it as:
    Frederic Bertels, Olin K. Silander, Mikhail Pachkov, Paul B. Rainey, and Erik van Nimwegen. Automated reconstruction of whole genome phylogenies from short sequence reads. Molecular Biology and Evolution; Published online 5 March 2014

About

REALPHY - The Reference sequence Alignment based Phylogeny builder is a free online pipeline that can infer phylogenetic trees from whole genome sequence data. The user only has to provide a small number of reference genomes in either FASTA or Genbank format (contigs or fully sequenced genomes) as well as a number of other query genomes which ca…

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages