relational database of structurally defined protein interfaces
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fredpdavis/pibase
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---------------------------------------------------------------------------- PIBASE: a comprehensive database of structurally defined protein interfaces. v2010. Released September 18, 2010. Copyright 2005,2010 Fred P. Davis ---------------------------------------------------------------------------- http://fredpdavis.com/pibase NOTE: The PIBASE server was retired in August 2015. The code is maintained here for archiving. A mysql dump of the database is available at https://zenodo.org/record/29589 o Using PIBASE -------------- For most users, the web server should prove adequate search functionality. If you are interested in more sophisticated queries, the database contents are available as a mysqldump at the website above, and you can design your own SQL queries. This package contains the software used to build the database. This is useful if you want to (1) build your own PIBASE installation, (2) setup a PIBASE webserver, or (3) are interested in routines for dealing with protein structures and protein-protein interactions. The code is mostly in Perl, with some C code for more expensive computations. o History --------- PIBASE was developed at the University of California, San Francisco in the laboratory of Andrej Sali (http://salilab.org) and the Janelia Research Campus of the Howard Hughes Medical Institute (http://janelia.org). o Citing PIBASE --------------- If you use the software, database, or webserver, please cite: PIBASE: a comprehensive database of structurally defined protein interfaces. Davis FP, Sali A. Bioinformatics (2005) 21(0): 1901-1907. o Contact information --------------- Fred P. Davis email: fredpdavis@gmail.com web: http://fredpdavis.com This file is part of PIBASE. PIBASE is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. PIBASE is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with PIBASE. If not, see <http://www.gnu.org/licenses/>. ----------------------------------------------------------------------------
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