relational database of structurally defined protein interfaces
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README

README

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PIBASE: a comprehensive database of structurally defined protein interfaces.
v2010. Released September 18, 2010.
Copyright 2005,2010 Fred P. Davis
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http://fredpdavis.com/pibase

NOTE: The PIBASE server was retired in August 2015. The code is maintained here
for archiving. A mysql dump of the database is available at
https://zenodo.org/record/29589

o Using PIBASE
--------------
 For most users, the web server should prove adequate search functionality.
 If you are interested in more sophisticated queries, the database contents
 are available as a mysqldump at the website above, and you can design your
 own SQL queries.

 This package contains the software used to build the database. This is useful
 if you want to (1) build your own PIBASE installation, (2) setup a PIBASE
 webserver, or (3) are interested in routines for dealing with protein
 structures and protein-protein interactions.

 The code is mostly in Perl, with some C code for more expensive computations.


o History
---------
 PIBASE was developed at the University of California, San Francisco in the
 laboratory of Andrej Sali (http://salilab.org) and the Janelia Research Campus
 of the Howard Hughes Medical Institute (http://janelia.org).


o Citing PIBASE
---------------
 If you use the software, database, or webserver, please cite:
 PIBASE: a comprehensive database of structurally defined protein interfaces.
 Davis FP, Sali A. Bioinformatics (2005) 21(0): 1901-1907.


o Contact information
---------------
 Fred P. Davis
 email: fredpdavis@gmail.com
 web:   http://fredpdavis.com


This file is part of PIBASE.

PIBASE is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

PIBASE is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with PIBASE.  If not, see <http://www.gnu.org/licenses/>.

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