the overlap of small molecule and protein binding sites within protein families
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COPYING
README

README

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PIBASE.ligands: a resource for analyzing the overlap of small molecule and
protein binding sites within families of protein structures.

v200905. Released May 18, 2009.
Copyright 2005,2008,2009 Fred P. Davis
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http://fredpdavis.com/pibase.ligands

NOTE: The PIBASE.ligands server was retired in August 2015. The code is
maintained here for archiving. A mysql dump of the database is available
at https://zenodo.org/record/29588

o Using PIBASE.ligands
--------------
 For most users, the web server should prove adequate search functionality.
 If you are interested in more sophisticated queries, the database contents
 are available as a mysqldump at the website above, and you can design your
 own SQL queries.

 This package contains the software used to provide web access to the
 database. This is useful if you want to setup a PIBASE.ligands webserver.

 Installation information is described in
 docs/pibase_ligands_installation_guide.pdf


o History
---------
 PIBASE was developed at the University of California, San Francisco in the
 laboratory of Andrej Sali (http://salilab.org) and at the Janelia Research
 Campus of the Howard Hughes Medical Institute (http://janelia.org).


o Citing PIBASE.ligands
-----------------------
 The overlap of small molecule and protein binding sites within families of
 protein structures.
 Davis FP, Sali A. PLoS Comput Biol 2010 6(2): e1000668.
 doi:10.1371/journal.pcbi.1000668

 The original PIBASE database is described here:
 PIBASE: a comprehensive database of structurally defined protein interfaces.
 Davis FP, Sali A. Bioinformatics (2005) 21(0): 1901-1907.


o Contact information
---------------
 Fred P. Davis
 email: fredpdavis@gmail.com
 web:   http://fredpdavis.com


This file is part of PIBASE.

PIBASE is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

PIBASE is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with PIBASE.  If not, see <http://www.gnu.org/licenses/>.

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