diff --git a/science/Makefile b/science/Makefile index 4d7200d9d13ba..98ca59dbb9db8 100644 --- a/science/Makefile +++ b/science/Makefile @@ -190,6 +190,7 @@ SUBDIR += openkim SUBDIR += openkim-models SUBDIR += openmc + SUBDIR += openmolcas SUBDIR += openmx SUBDIR += opensim-core SUBDIR += opensph diff --git a/science/openmolcas/Makefile b/science/openmolcas/Makefile new file mode 100644 index 0000000000000..6c0b062fc8ee1 --- /dev/null +++ b/science/openmolcas/Makefile @@ -0,0 +1,48 @@ +PORTNAME= openmolcas +DISTVERSION= 22.02 +CATEGORIES= science # chemistry + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Quantum chemistry software package + +LICENSE= LGPL21 +LICENSE_FILE= ${WRKSRC}/LICENSE + +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pyparsing>0:devel/py-pyparsing@${PY_FLAVOR} +LIB_DEPENDS= libhdf5.so:science/hdf5 \ + libsz.so:science/szip \ + libxc.so:science/libxc + +USES= cmake fortran python shebangfix +USE_GCC= yes # see https://gitlab.com/Molcas/OpenMolcas/-/issues/351 + +USE_GITLAB= yes +GL_ACCOUNT= Molcas +GL_PROJECT= OpenMolcas +GL_COMMIT= f8df69cf87b241a15ebc82d72a8f9a031a385dd4 + +USE_GITHUB= nodefault +GH_TUPLE= Reference-LAPACK:lapack:aa631b4b:lapack/External/lapack \ + libwfa:libwfa:bbe3392a:libwfa/External/libwfa + +SHEBANG_FILES= sbin/help_doc sbin/help_func sbin/help_basis sbin/setup sbin/verify sbin/version + +CMAKE_ARGS= -DEXTERNAL_LIBXC:STRING=${LOCALBASE} \ + -DFREEBSD_PYTHON_VER:STRING=${PYTHON_VER} +#CMAKE_ON= # for EFPLIB, MSYM see https://gitlab.com/Molcas/OpenMolcas/-/issues/350, for WFA - hdf5 needs updating +CMAKE_OFF= BUILD_TESTING + +CMAKE_INSTALL_PREFIX= ${DATADIR} # installed into DATADIR because it doesn't respect UNIX file path conventions, see https://gitlab.com/Molcas/OpenMolcas/-/issues/352 + +BINARY_ALIAS= cpp=${CPP} # cpp is called from cmake scripts + +post-install: + # remove unused static libraries, see https://gitlab.com/Molcas/OpenMolcas/-/issues/354 + @${RM} -r ${STAGEDIR}${CMAKE_INSTALL_PREFIX}/lib + # remove unnecessary fines + @${RM} ${STAGEDIR}${CMAKE_INSTALL_PREFIX}/CONTRIBUTORS.md + @${RM} ${STAGEDIR}${CMAKE_INSTALL_PREFIX}/LICENSE + # remove empty doc directory + @${RMDIR} ${STAGEDIR}${DATADIR}/doc + +.include diff --git a/science/openmolcas/distinfo b/science/openmolcas/distinfo new file mode 100644 index 0000000000000..962f32203d225 --- /dev/null +++ b/science/openmolcas/distinfo @@ -0,0 +1,7 @@ +TIMESTAMP = 1653368495 +SHA256 (Reference-LAPACK-lapack-aa631b4b_GH0.tar.gz) = 04ddd43c8b1bed6447427e9dd2b4dd2ead7e2497d7a8fa5fea7f9b31f52117a2 +SIZE (Reference-LAPACK-lapack-aa631b4b_GH0.tar.gz) = 7631245 +SHA256 (libwfa-libwfa-bbe3392a_GH0.tar.gz) = c130488370ab0df228e532c80223ded3d23d80f04d405c2912588cfcfa05d121 +SIZE (libwfa-libwfa-bbe3392a_GH0.tar.gz) = 192935 +SHA256 (Molcas-OpenMolcas-f8df69cf87b241a15ebc82d72a8f9a031a385dd4_GL0.tar.gz) = 862ab4e5a76955e67af870c7c1b4344c250784299c5c0363c425a722671a892a +SIZE (Molcas-OpenMolcas-f8df69cf87b241a15ebc82d72a8f9a031a385dd4_GL0.tar.gz) = 38439145 diff --git a/science/openmolcas/files/patch-CMakeLists.txt b/science/openmolcas/files/patch-CMakeLists.txt new file mode 100644 index 0000000000000..5fff45b0e5f22 --- /dev/null +++ b/science/openmolcas/files/patch-CMakeLists.txt @@ -0,0 +1,11 @@ +--- CMakeLists.txt.orig 2022-05-24 05:51:48 UTC ++++ CMakeLists.txt +@@ -48,7 +48,7 @@ find_program (GIT "git") + find_program (PERL "perl") + mark_as_advanced (FORCE GIT PERL) + +-FIND_PACKAGE (Python COMPONENTS Interpreter) ++FIND_PACKAGE (Python ${FREEBSD_PYTHON_VER} EXACT COMPONENTS Interpreter) + + ################################################################################ + # # diff --git a/science/openmolcas/files/patch-src_mma__util_cgetshmem.c b/science/openmolcas/files/patch-src_mma__util_cgetshmem.c new file mode 100644 index 0000000000000..3044e1ea52612 --- /dev/null +++ b/science/openmolcas/files/patch-src_mma__util_cgetshmem.c @@ -0,0 +1,11 @@ +--- src/mma_util/cgetshmem.c.orig 2022-05-24 05:38:26 UTC ++++ src/mma_util/cgetshmem.c +@@ -134,6 +134,8 @@ INT add_shmentry(mstat *MM, mentry *tmp, char *path, I + shmid = shmget(SHM_key, (size_t) tmp->len, 0644|IPC_CREAT|IPC_EXCL); + #elif _AIX_ + shmid = shmget(SHM_key, (size_t) tmp->len, 0644|IPC_CREAT|IPC_EXCL|SHM_PIN); ++#elif __FreeBSD__ ++ shmid = shmget(SHM_key, (size_t) tmp->len, 0644|IPC_CREAT|IPC_EXCL); + #else + shmid = shmget(SHM_key, (size_t) tmp->len, 0644|IPC_CREAT|IPC_EXCL|SHM_LOCKED); + /* shmid = shmget(SHM_key, (size_t) tmp->len, 0644|IPC_CREAT|IPC_EXCL|SHM_LOCKED|SHM_NORESERVE);*/ diff --git a/science/openmolcas/pkg-descr b/science/openmolcas/pkg-descr new file mode 100644 index 0000000000000..3a31527b50978 --- /dev/null +++ b/science/openmolcas/pkg-descr @@ -0,0 +1,6 @@ +OpenMolcas is a quantum chemistry software package. + +The key feature of OpenMolcas is the multiconfigurational +approach to the electronic structure. + +WWW: https://gitlab.com/Molcas/OpenMolcas diff --git a/science/openmolcas/pkg-plist b/science/openmolcas/pkg-plist new file mode 100644 index 0000000000000..3c439dfd8557b --- /dev/null +++ b/science/openmolcas/pkg-plist @@ -0,0 +1,214 @@ +%%DATADIR%%/.molcashome +%%DATADIR%%/.molcasversion +%%DATADIR%%/basis_library/3-21G +%%DATADIR%%/basis_library/4-31G +%%DATADIR%%/basis_library/5-21G +%%DATADIR%%/basis_library/6-311Gpp +%%DATADIR%%/basis_library/6-31G +%%DATADIR%%/basis_library/6-31Gpp +%%DATADIR%%/basis_library/AHLRICHS_VDZ +%%DATADIR%%/basis_library/AHLRICHS_VTZ +%%DATADIR%%/basis_library/AIMP.README +%%DATADIR%%/basis_library/ANO-DK3 +%%DATADIR%%/basis_library/ANO-L +%%DATADIR%%/basis_library/ANO-ORCA +%%DATADIR%%/basis_library/ANO-R +%%DATADIR%%/basis_library/ANO-RCC +%%DATADIR%%/basis_library/ANO-RCC.README +%%DATADIR%%/basis_library/ANO-S +%%DATADIR%%/basis_library/ANO-XS +%%DATADIR%%/basis_library/AUG-CC-PV5Z +%%DATADIR%%/basis_library/AUG-CC-PV6Z +%%DATADIR%%/basis_library/AUG-CC-PVDZ +%%DATADIR%%/basis_library/AUG-CC-PVQZ +%%DATADIR%%/basis_library/AUG-CC-PVTZ +%%DATADIR%%/basis_library/AUG-PC-0 +%%DATADIR%%/basis_library/AUG-PC-1 +%%DATADIR%%/basis_library/AUG-PC-2 +%%DATADIR%%/basis_library/AUG-PC-3 +%%DATADIR%%/basis_library/AUG-PC-4 +%%DATADIR%%/basis_library/CC-PV5Z +%%DATADIR%%/basis_library/CC-PV5Z-DK +%%DATADIR%%/basis_library/CC-PVDZ +%%DATADIR%%/basis_library/CC-PVDZ-DK +%%DATADIR%%/basis_library/CC-PVQZ +%%DATADIR%%/basis_library/CC-PVQZ-DK +%%DATADIR%%/basis_library/CC-PVTZ +%%DATADIR%%/basis_library/CC-PVTZ-DK +%%DATADIR%%/basis_library/CC-PWCV5Z-DK +%%DATADIR%%/basis_library/CC-PWCVQZ-DK +%%DATADIR%%/basis_library/CC-PWCVTZ-DK +%%DATADIR%%/basis_library/CG-AIMP +%%DATADIR%%/basis_library/DEF-SV-P +%%DATADIR%%/basis_library/DEF-SVP +%%DATADIR%%/basis_library/DEF-TZVP +%%DATADIR%%/basis_library/DEF2-SVP +%%DATADIR%%/basis_library/DEF2-TZVP +%%DATADIR%%/basis_library/DEF2-TZVPP +%%DATADIR%%/basis_library/EMB-AIMP +%%DATADIR%%/basis_library/JGAUSS-DZP +%%DATADIR%%/basis_library/LANL2DZ +%%DATADIR%%/basis_library/LANL2DZ_NL +%%DATADIR%%/basis_library/MCP-AQZP +%%DATADIR%%/basis_library/MCP-ATZP +%%DATADIR%%/basis_library/MCP-DZP +%%DATADIR%%/basis_library/MCP-QZP +%%DATADIR%%/basis_library/MCP-TZP +%%DATADIR%%/basis_library/MUONIC +%%DATADIR%%/basis_library/NP-AIMP +%%DATADIR%%/basis_library/NR-AIMP +%%DATADIR%%/basis_library/PC-0 +%%DATADIR%%/basis_library/PC-1 +%%DATADIR%%/basis_library/PC-2 +%%DATADIR%%/basis_library/PC-3 +%%DATADIR%%/basis_library/PC-4 +%%DATADIR%%/basis_library/QRPLIB +%%DATADIR%%/basis_library/RAF-R +%%DATADIR%%/basis_library/RYDBERG +%%DATADIR%%/basis_library/SADLEJ_PVTZ +%%DATADIR%%/basis_library/SARC2-QZVP-DKH2 +%%DATADIR%%/basis_library/STO-3G +%%DATADIR%%/basis_library/STUTTGART +%%DATADIR%%/basis_library/STUTTGART_NL +%%DATADIR%%/basis_library/basis.tbl +%%DATADIR%%/basis_library/basistype.tbl +%%DATADIR%%/basis_library/c_Basis/DEF-SV-P +%%DATADIR%%/basis_library/c_Basis/DEF-SVP +%%DATADIR%%/basis_library/c_Basis/DEF-TZVP +%%DATADIR%%/basis_library/c_Basis/basis.tbl +%%DATADIR%%/basis_library/c_Basis/basistype.tbl +%%DATADIR%%/basis_library/c_Basis/trans.tbl +%%DATADIR%%/basis_library/j_Basis/DEF-SV-P +%%DATADIR%%/basis_library/j_Basis/DEF-SVP +%%DATADIR%%/basis_library/j_Basis/DEF-TZVP +%%DATADIR%%/basis_library/j_Basis/basis.tbl +%%DATADIR%%/basis_library/j_Basis/basistype.tbl +%%DATADIR%%/basis_library/j_Basis/trans.tbl +%%DATADIR%%/basis_library/jk_Basis/CC-PVTZ +%%DATADIR%%/basis_library/jk_Basis/DEF-SV-P +%%DATADIR%%/basis_library/jk_Basis/DEF-SVP +%%DATADIR%%/basis_library/jk_Basis/basis.tbl +%%DATADIR%%/basis_library/jk_Basis/basistype.tbl +%%DATADIR%%/basis_library/jk_Basis/trans.tbl +%%DATADIR%%/basis_library/trans.tbl +%%DATADIR%%/bin/alaska.exe +%%DATADIR%%/bin/averd.exe +%%DATADIR%%/bin/caspt2.exe +%%DATADIR%%/bin/casvb.exe +%%DATADIR%%/bin/ccsdt.exe +%%DATADIR%%/bin/chcc.exe +%%DATADIR%%/bin/cht3.exe +%%DATADIR%%/bin/cpf.exe +%%DATADIR%%/bin/dynamix.exe +%%DATADIR%%/bin/espf.exe +%%DATADIR%%/bin/expbas.exe +%%DATADIR%%/bin/extf.exe 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+%%DATADIR%%/data/keyword.db +%%DATADIR%%/data/keyword.xml +%%DATADIR%%/data/landing.txt +%%DATADIR%%/data/last_energy.prgm +%%DATADIR%%/data/localisation.prgm +%%DATADIR%%/data/loprop.prgm +%%DATADIR%%/data/mbpt2.prgm +%%DATADIR%%/data/mckinley.prgm +%%DATADIR%%/data/mclr.prgm +%%DATADIR%%/data/mcpdft.prgm +%%DATADIR%%/data/modalias.txt +%%DATADIR%%/data/motra.prgm +%%DATADIR%%/data/mpprop.prgm +%%DATADIR%%/data/mpssi.prgm +%%DATADIR%%/data/mrci.prgm +%%DATADIR%%/data/mula.prgm +%%DATADIR%%/data/nevpt2.prgm +%%DATADIR%%/data/numerical_gradient.prgm +%%DATADIR%%/data/poly_aniso.prgm +%%DATADIR%%/data/qmstat.prgm +%%DATADIR%%/data/quater.prgm +%%DATADIR%%/data/rasscf.prgm +%%DATADIR%%/data/rassi.prgm +%%DATADIR%%/data/rcodes.txt +%%DATADIR%%/data/rhodyn.prgm +%%DATADIR%%/data/rpa.prgm +%%DATADIR%%/data/rysrw +%%DATADIR%%/data/scf.prgm +%%DATADIR%%/data/seward.prgm +%%DATADIR%%/data/single_aniso.prgm +%%DATADIR%%/data/slapaf.prgm +%%DATADIR%%/data/surfacehop.prgm +%%DATADIR%%/data/symmetrize.prgm +%%DATADIR%%/data/vibrot.prgm +%%DATADIR%%/data/wfa.prgm +%%DATADIR%%/molcas.rte +%%DATADIR%%/pymolcas +%%DATADIR%%/sbin/help_basis +%%DATADIR%%/sbin/help_doc +%%DATADIR%%/sbin/help_func +%%DATADIR%%/sbin/setup +%%DATADIR%%/sbin/version