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update the R base ports to 2.15.2 and adjust dependent ports

Reviewed by:	thierry, tota, wen


git-svn-id: svn+ssh://svn.freebsd.org/ports/head@309935 aed309b6-a8cd-e111-996c-001c23d10e55
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bf committed Jan 4, 2013
1 parent f8b8367 commit 3c545da77c85bbdc982cd39843a7acc77d1ecd46
Showing with 301 additions and 384 deletions.
  1. +1 −0 astro/R-cran-maptools/Makefile
  2. +1 −0 converters/R-cran-RJSONIO/Makefile
  3. +1 −0 converters/R-cran-rjson/Makefile
  4. +2 −6 databases/R-cran-DBI/Makefile
  5. +2 −6 databases/R-cran-RMySQL/Makefile
  6. +2 −5 databases/R-cran-RSQLite.extfuns/Makefile
  7. +2 −5 databases/R-cran-RSQLite/Makefile
  8. +2 −5 databases/R-cran-sqldf/Makefile
  9. +2 −6 devel/R-cran-Defaults/Makefile
  10. +1 −0 devel/R-cran-Hmisc/Makefile
  11. +2 −5 devel/R-cran-RUnit/Makefile
  12. +1 −0 devel/R-cran-bitops/Makefile
  13. +1 −0 devel/R-cran-caret/Makefile
  14. +2 −5 devel/R-cran-chron/Makefile
  15. +2 −6 devel/R-cran-foreach/Makefile
  16. +1 −0 devel/R-cran-gbm/Makefile
  17. +1 −0 devel/R-cran-glmnet/Makefile
  18. +2 −5 devel/R-cran-gsubfn/Makefile
  19. +2 −6 devel/R-cran-iterators/Makefile
  20. +2 −6 devel/R-cran-itertools/Makefile
  21. +2 −6 devel/R-cran-memoise/Makefile
  22. +1 −0 devel/R-cran-plyr/Makefile
  23. +1 −0 devel/R-cran-proto/Makefile
  24. +1 −0 devel/R-cran-randomForest/Makefile
  25. +2 −6 devel/R-cran-reshape/Makefile
  26. +1 −0 devel/R-cran-reshape2/Makefile
  27. +2 −6 finance/R-cran-PerformanceAnalytics/Makefile
  28. +2 −6 finance/R-cran-RFinanceYJ/Makefile
  29. +2 −6 finance/R-cran-TTR/Makefile
  30. +2 −6 finance/R-cran-ccgarch/Makefile
  31. +1 −0 finance/R-cran-fBasics/Makefile
  32. +1 −0 finance/R-cran-fGarch/Makefile
  33. +1 −0 finance/R-cran-gmm/Makefile
  34. +2 −5 finance/R-cran-lmtest/Makefile
  35. +1 −0 finance/R-cran-plm/Makefile
  36. +2 −6 finance/R-cran-quantmod/Makefile
  37. +2 −6 finance/R-cran-strucchange/Makefile
  38. +1 −0 finance/R-cran-timeDate/Makefile
  39. +1 −0 finance/R-cran-timeSeries/Makefile
  40. +1 −0 finance/R-cran-tseries/Makefile
  41. +2 −5 finance/R-cran-urca/Makefile
  42. +2 −5 finance/R-cran-vars/Makefile
  43. +1 −0 ftp/R-cran-RCurl/Makefile
  44. +2 −5 graphics/R-cran-GDD/Makefile
  45. +2 −6 graphics/R-cran-RColorBrewer/Makefile
  46. +1 −0 graphics/R-cran-colorspace/Makefile
  47. +2 −6 graphics/R-cran-diagram/Makefile
  48. +2 −6 graphics/R-cran-dichromat/Makefile
  49. +1 −0 graphics/R-cran-ggplot2/Makefile
  50. +2 −5 graphics/R-cran-munsell/Makefile
  51. +2 −6 graphics/R-cran-pixmap/Makefile
  52. +1 −0 graphics/R-cran-png/Makefile
  53. +1 −0 graphics/R-cran-rgdal/Makefile
  54. +2 −6 graphics/R-cran-rtiff/Makefile
  55. +1 −0 graphics/R-cran-scales/Makefile
  56. +2 −5 graphics/R-cran-shape/Makefile
  57. +2 −6 math/R-cran-Formula/Makefile
  58. +2 −5 math/R-cran-KFAS/Makefile
  59. +1 −0 math/R-cran-LearnBayes/Makefile
  60. +1 −0 math/R-cran-MCMCpack/Makefile
  61. +1 −0 math/R-cran-RHmm/Makefile
  62. +2 −6 math/R-cran-RSvgDevice/Makefile
  63. +4 −7 math/R-cran-SuppDists/Makefile
  64. +1 −0 math/R-cran-Zelig/Makefile
  65. +2 −6 math/R-cran-bdsmatrix/Makefile
  66. +1 −0 math/R-cran-car/Makefile
  67. +1 −0 math/R-cran-coda/Makefile
  68. +1 −0 math/R-cran-deldir/Makefile
  69. +2 −5 math/R-cran-dlmodeler/Makefile
  70. +2 −5 math/R-cran-gpclib/Makefile
  71. +1 −0 math/R-cran-gtable/Makefile
  72. +1 −0 math/R-cran-igraph/Makefile
  73. +1 −0 math/R-cran-inline/Makefile
  74. +2 −6 math/R-cran-labeling/Makefile
  75. +2 −6 math/R-cran-memisc/Makefile
  76. +2 −6 math/R-cran-mvtnorm/Makefile
  77. +2 −4 math/R-cran-nnls/Makefile
  78. +2 −6 math/R-cran-psych/Makefile
  79. +1 −0 math/R-cran-quadprog/Makefile
  80. +2 −6 math/R-cran-sandwich/Makefile
  81. +2 −6 math/R-cran-sm/Makefile
  82. +1 −0 math/R-cran-sp/Makefile
  83. +1 −0 math/R-cran-spdep/Makefile
  84. +1 −0 math/R-cran-stabledist/Makefile
  85. +1 −0 math/R-cran-xts/Makefile
  86. +1 −0 math/R-cran-zoo/Makefile
  87. +64 −20 math/R/Makefile
  88. +2 −2 math/R/distinfo
  89. +59 −10 math/R/pkg-plist
  90. +1 −0 math/ess/Makefile
  91. +2 −6 math/p5-Statistics-R/Makefile
  92. +1 −0 math/rkward-kde4/Makefile
  93. +2 −6 math/rkward/Makefile
  94. +2 −7 math/rpy/Makefile
  95. +1 −1 math/rpy/pkg-plist
  96. +2 −7 math/rpy2/Makefile
  97. +2 −6 net/R-cran-twitteR/Makefile
  98. +2 −6 science/R-cran-AMORE/Makefile
  99. +2 −6 science/R-cran-DCluster/Makefile
  100. +1 −0 science/R-cran-Epi/Makefile
  101. +2 −6 science/R-cran-bayesm/Makefile
  102. +2 −5 science/R-cran-e1071/Makefile
  103. +2 −6 science/R-cran-eco/Makefile
  104. +1 −0 science/R-cran-epicalc/Makefile
  105. +2 −5 science/R-cran-snow/Makefile
  106. +2 −6 science/R-cran-som/Makefile
  107. +2 −7 science/afni/Makefile
  108. +1 −0 security/R-cran-ROAuth/Makefile
  109. +1 −0 security/R-cran-digest/Makefile
  110. +1 −0 textproc/R-cran-R2HTML/Makefile
  111. +1 −0 textproc/R-cran-XML/Makefile
  112. +1 −0 textproc/R-cran-stringr/Makefile
  113. +2 −6 textproc/R-cran-xtable/Makefile
  114. +1 −0 www/R-cran-RgoogleMaps/Makefile
  115. +2 −6 www/R-cran-Rpad/Makefile
  116. +2 −6 www/R-cran-scrapeR/Makefile
@@ -3,6 +3,7 @@
PORTNAME= maptools
DISTVERSION= 0.8-21
+PORTREVISION= 1
CATEGORIES= astro
DISTNAME= ${PORTNAME}_${DISTVERSION}
@@ -3,6 +3,7 @@
PORTNAME= RJSONIO
DISTVERSION= 1.0-1
+PORTREVISION= 1
CATEGORIES= converters
DISTNAME= ${PORTNAME}_${DISTVERSION}
@@ -3,6 +3,7 @@
PORTNAME= rjson
PORTVERSION= 0.2.11
+PORTREVISION= 1
CATEGORIES= converters
DISTNAME= ${PORTNAME}_${PORTVERSION}
@@ -1,13 +1,9 @@
-# New ports collection makefile for: R-cran-DBI
-# Date created: 2011-08-16
-# Whom: TAKATSU Tomonari <tota@FreeBSD.org>
-#
+# Created by: TAKATSU Tomonari <tota@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= DBI
DISTVERSION= 0.2-5
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= databases
DISTNAME= ${PORTNAME}_${DISTVERSION}
@@ -1,13 +1,9 @@
-# New ports collection makefile for: R-cran-RMySQL
-# Date created: 2011-08-16
-# Whom: TAKATSU Tomonari <tota@FreeBSD.org>
-#
+# Created by: TAKATSU Tomonari <tota@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= RMySQL
DISTVERSION= 0.9-3
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= databases
DISTNAME= ${PORTNAME}_${DISTVERSION}
@@ -1,12 +1,9 @@
-# New ports collection makefile for: R-cran-RSQLite.extfuns
-# Date created: 2012-08-21
-# Whom: Steven Kreuzer <skreuzer@FreeBSD.org>
-#
+# Created by: Steven Kreuzer <skreuzer@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= RSQLite.extfuns
PORTVERSION= 0.0.1
+PORTREVISION= 1
CATEGORIES= databases
DISTNAME= ${PORTNAME}_${PORTVERSION}
@@ -1,12 +1,9 @@
-# New ports collection makefile for: R-cran-RSQLite
-# Date created: 2012-08-21
-# Whom: Steven Kreuzer <skreuzer@FreeBSD.org>
-#
+# Created by: Steven Kreuzer <skreuzer@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= RSQLite
PORTVERSION= 0.11.2
+PORTREVISION= 1
CATEGORIES= databases
DISTNAME= ${PORTNAME}_${PORTVERSION}
@@ -1,12 +1,9 @@
-# New ports collection makefile for: R-cran-sqldf
-# Date created: 2012-08-21
-# Whom: Steven Kreuzer <skreuzer@FreeBSD.org>
-#
+# Created by: Steven Kreuzer <skreuzer@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= sqldf
DISTVERSION= 0.4-6.4
+PORTREVISION= 1
CATEGORIES= databases
DISTNAME= ${PORTNAME}_${DISTVERSION}
@@ -1,13 +1,9 @@
-# New ports collection makefile for: R-cran-Defaults
-# Date created: 2011-10-30
-# Whom: TAKATSU Tomonari <tota@FreeBSD.org>
-#
+# Created by: TAKATSU Tomonari <tota@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= Defaults
DISTVERSION= 1.1-1
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${DISTVERSION}
@@ -2,6 +2,7 @@
PORTNAME= Hmisc
DISTVERSION= 3.10-1
+PORTREVISION= 1
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${DISTVERSION}
@@ -1,12 +1,9 @@
-# New ports collection makefile for: RUnit
-# Date created: 2012-08-21
-# Whom: Steven Kreuzer <skreuzer@FreeBSD.org>
-#
+# Created by: Steven Kreuzer <skreuzer@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= RUnit
PORTVERSION= 0.4.26
+PORTREVISION= 1
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${PORTVERSION}
@@ -3,6 +3,7 @@
PORTNAME= bitops
DISTVERSION= 1.0-5
+PORTREVISION= 1
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${DISTVERSION}
@@ -3,6 +3,7 @@
PORTNAME= caret
DISTVERSION= 5.15-048
+PORTREVISION= 1
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${DISTVERSION}
@@ -1,12 +1,9 @@
-# New ports collection makefile for: chron
-# Date created: 2012-08-22
-# Whom: Steven Kreuzer <skreuzer@FreeBSD.org>
-#
+# Created by: Steven Kreuzer <skreuzer@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= chron
DISTVERSION= 2.3-43
+PORTREVISION= 1
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${DISTVERSION}
@@ -1,13 +1,9 @@
-# New ports collection makefile for: R-cran-foreach
-# Date created: 2011-09-04
-# Whom: TAKATSU Tomonari <tota@FreeBSD.org>
-#
+# Created by: TAKATSU Tomonari <tota@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= foreach
PORTVERSION= 1.4.0
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${PORTVERSION}
@@ -2,6 +2,7 @@
PORTNAME= gbm
DISTVERSION= 1.6-3.2
+PORTREVISION= 1
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${DISTVERSION}
@@ -2,6 +2,7 @@
PORTNAME= glmnet
PORTVERSION= 1.8
+PORTREVISION= 1
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${PORTVERSION}
@@ -1,12 +1,9 @@
-# New ports collection makefile for: R-cran-gsubfn
-# Date created: 2012-08-21
-# Whom: Steven Kreuzer <skreuzer@FreeBSD.org>
-#
+# Created by: Steven Kreuzer <skreuzer@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= gsubfn
DISTVERSION= 0.6-4
+PORTREVISION= 1
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${DISTVERSION}
@@ -1,13 +1,9 @@
-# New ports collection makefile for: R-cran-iterators
-# Date created: 2011-08-16
-# Whom: TAKATSU Tomonari <tota@FreeBSD.org>
-#
+# Created by: TAKATSU Tomonari <tota@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= iterators
PORTVERSION= 1.0.6
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${PORTVERSION}
@@ -1,13 +1,9 @@
-# New ports collection makefile for: R-cran-itertools
-# Date created: 2011-08-16
-# Whom: TAKATSU Tomonari <tota@FreeBSD.org>
-#
+# Created by: TAKATSU Tomonari <tota@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= itertools
DISTVERSION= 0.1-1
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${DISTVERSION}
@@ -1,13 +1,9 @@
-# New ports collection makefile for: R-cran-memoise
-# Date created: 2012-03-05
-# Whom: TAKATSU Tomonari <tota@FreeBSD.org>
-#
+# Created by: TAKATSU Tomonari <tota@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= memoise
PORTVERSION= 0.1
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${PORTVERSION}
@@ -3,6 +3,7 @@
PORTNAME= plyr
PORTVERSION= 1.8
+PORTREVISION= 1
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${DISTVERSION}
@@ -3,6 +3,7 @@
PORTNAME= proto
DISTVERSION= 0.3-10
+PORTREVISION= 1
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${DISTVERSION}
@@ -2,6 +2,7 @@
PORTNAME= randomForest
DISTVERSION= 4.6-6
+PORTREVISION= 1
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${DISTVERSION}
@@ -1,13 +1,9 @@
-# New ports collection makefile for: R-cran-reshape
-# Date created: 2011-08-30
-# Whom: TAKATSU Tomonari <tota@FreeBSD.org>
-#
+# Created by: TAKATSU Tomonari <tota@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= reshape
PORTVERSION= 0.8.4
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${PORTVERSION}
@@ -3,6 +3,7 @@
PORTNAME= reshape2
PORTVERSION= 1.2.2
+PORTREVISION= 1
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${PORTVERSION}
@@ -1,13 +1,9 @@
-# New ports collection makefile for: R-cran-PerformanceAnalytics
-# Date created: 2012-04-19
-# Whom: TAKATSU Tomonari <tota@FreeBSD.org>
-#
+# Created by: TAKATSU Tomonari <tota@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= PerformanceAnalytics
PORTVERSION= 1.0.4.4
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= finance
DISTNAME= ${PORTNAME}_${PORTVERSION}
@@ -1,13 +1,9 @@
-# New ports collection makefile for: R-cran-RFinanceYJ
-# Date created: 2011-08-06
-# Whom: TAKATSU Tomonari <tota@FreeBSD.org>
-#
+# Created by: TAKATSU Tomonari <tota@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= RFinanceYJ
PORTVERSION= 0.1.6
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= finance
DISTNAME= ${PORTNAME}_${PORTVERSION}
@@ -1,13 +1,9 @@
-# New ports collection makefile for: R-cran-TTR
-# Date created: 2011-10-30
-# Whom: TAKATSU Tomonari <tota@FreeBSD.org>
-#
+# Created by: TAKATSU Tomonari <tota@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= TTR
DISTVERSION= 0.21-1
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= finance
DISTNAME= ${PORTNAME}_${DISTVERSION}
@@ -1,13 +1,9 @@
-# New ports collection makefile for: R-cran-ccgarch
-# Date created: 2011-09-23
-# Whom: TAKATSU Tomonari <tota@FreeBSD.org>
-#
+# Created by: TAKATSU Tomonari <tota@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= ccgarch
PORTVERSION= 0.2.0
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= finance
DISTNAME= ${PORTNAME}_${PORTVERSION}
@@ -3,6 +3,7 @@
PORTNAME= fBasics
PORTVERSION= 2160.85
+PORTREVISION= 1
CATEGORIES= finance
DISTNAME= ${PORTNAME}_${PORTVERSION}
@@ -3,6 +3,7 @@
PORTNAME= fGarch
PORTVERSION= 2150.81
+PORTREVISION= 1
CATEGORIES= finance
DISTNAME= ${PORTNAME}_${PORTVERSION}
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